Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01835

Experiment: 30_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01825 and AMB_RS01830 overlap by 4 nucleotidesAMB_RS01830 and AMB_RS01835 overlap by 8 nucleotidesAMB_RS01835 and AMB_RS01840 are separated by 403 nucleotides AMB_RS01825: AMB_RS01825 - hypothetical protein, at 394,598 to 395,110 _RS01825 AMB_RS01830: AMB_RS01830 - hypothetical protein, at 395,107 to 395,304 _RS01830 AMB_RS01835: AMB_RS01835 - hypothetical protein, at 395,297 to 395,788 _RS01835 AMB_RS01840: AMB_RS01840 - DNA methyltransferase, at 396,192 to 397,745 _RS01840 Position (kb) 395 396Strain fitness (log2 ratio) -2 -1 0 1at 394.396 kb on + strandat 394.396 kb on + strandat 394.452 kb on + strandat 394.452 kb on + strandat 394.453 kb on - strandat 394.512 kb on + strandat 394.653 kb on + strand, within AMB_RS01825at 394.654 kb on - strand, within AMB_RS01825at 394.654 kb on - strand, within AMB_RS01825at 394.769 kb on + strand, within AMB_RS01825at 394.770 kb on - strand, within AMB_RS01825at 394.832 kb on + strand, within AMB_RS01825at 394.832 kb on + strand, within AMB_RS01825at 394.832 kb on + strand, within AMB_RS01825at 394.833 kb on - strand, within AMB_RS01825at 394.833 kb on - strand, within AMB_RS01825at 394.934 kb on + strand, within AMB_RS01825at 395.267 kb on - strand, within AMB_RS01830at 395.393 kb on + strand, within AMB_RS01835at 395.393 kb on + strand, within AMB_RS01835at 395.393 kb on + strand, within AMB_RS01835at 395.393 kb on + strand, within AMB_RS01835at 395.393 kb on + strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.394 kb on - strand, within AMB_RS01835at 395.426 kb on + strand, within AMB_RS01835at 395.439 kb on - strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.601 kb on + strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.602 kb on - strand, within AMB_RS01835at 395.626 kb on + strand, within AMB_RS01835at 395.626 kb on + strand, within AMB_RS01835at 395.626 kb on + strand, within AMB_RS01835at 395.627 kb on - strand, within AMB_RS01835at 395.628 kb on - strand, within AMB_RS01835at 395.639 kb on + strand, within AMB_RS01835at 395.640 kb on - strand, within AMB_RS01835at 395.640 kb on - strand, within AMB_RS01835at 395.640 kb on - strand, within AMB_RS01835at 395.790 kb on - strandat 395.927 kb on + strandat 395.927 kb on + strandat 395.927 kb on + strandat 395.927 kb on + strandat 395.928 kb on - strandat 395.928 kb on - strandat 395.928 kb on - strandat 395.928 kb on - strandat 395.972 kb on + strandat 395.972 kb on + strandat 395.972 kb on + strandat 395.973 kb on - strandat 395.973 kb on - strandat 396.033 kb on + strandat 396.033 kb on + strandat 396.270 kb on + strandat 396.270 kb on + strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.271 kb on - strandat 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.579 kb on + strand, within AMB_RS01840at 396.580 kb on - strand, within AMB_RS01840at 396.580 kb on - strand, within AMB_RS01840at 396.580 kb on - strand, within AMB_RS01840at 396.759 kb on + strand, within AMB_RS01840at 396.759 kb on + strand, within AMB_RS01840

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_3
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394,396 + -0.7
394,396 + -0.3
394,452 + -1.3
394,452 + +0.0
394,453 - +0.1
394,512 + +0.4
394,653 + AMB_RS01825 0.11 -0.3
394,654 - AMB_RS01825 0.11 +0.4
394,654 - AMB_RS01825 0.11 -0.0
394,769 + AMB_RS01825 0.33 -0.3
394,770 - AMB_RS01825 0.34 -0.7
394,832 + AMB_RS01825 0.46 +1.1
394,832 + AMB_RS01825 0.46 -0.6
394,832 + AMB_RS01825 0.46 +1.6
394,833 - AMB_RS01825 0.46 +1.3
394,833 - AMB_RS01825 0.46 -0.4
394,934 + AMB_RS01825 0.65 +1.1
395,267 - AMB_RS01830 0.81 +0.2
395,393 + AMB_RS01835 0.20 -0.2
395,393 + AMB_RS01835 0.20 -1.2
395,393 + AMB_RS01835 0.20 -0.0
395,393 + AMB_RS01835 0.20 -0.9
395,393 + AMB_RS01835 0.20 -0.3
395,394 - AMB_RS01835 0.20 -0.3
395,394 - AMB_RS01835 0.20 +0.2
395,394 - AMB_RS01835 0.20 -0.3
395,394 - AMB_RS01835 0.20 -0.6
395,394 - AMB_RS01835 0.20 -1.8
395,394 - AMB_RS01835 0.20 -1.0
395,394 - AMB_RS01835 0.20 -0.4
395,394 - AMB_RS01835 0.20 +0.8
395,426 + AMB_RS01835 0.26 -0.3
395,439 - AMB_RS01835 0.29 -0.7
395,601 + AMB_RS01835 0.62 -0.4
395,601 + AMB_RS01835 0.62 -0.2
395,601 + AMB_RS01835 0.62 -0.5
395,601 + AMB_RS01835 0.62 +0.7
395,601 + AMB_RS01835 0.62 +0.7
395,601 + AMB_RS01835 0.62 -0.4
395,601 + AMB_RS01835 0.62 -1.6
395,602 - AMB_RS01835 0.62 -0.5
395,602 - AMB_RS01835 0.62 -0.2
395,602 - AMB_RS01835 0.62 +1.0
395,602 - AMB_RS01835 0.62 +0.1
395,602 - AMB_RS01835 0.62 -0.5
395,602 - AMB_RS01835 0.62 -0.9
395,626 + AMB_RS01835 0.67 -0.2
395,626 + AMB_RS01835 0.67 -0.3
395,626 + AMB_RS01835 0.67 -0.8
395,627 - AMB_RS01835 0.67 -0.1
395,628 - AMB_RS01835 0.67 +0.3
395,639 + AMB_RS01835 0.70 +1.0
395,640 - AMB_RS01835 0.70 +0.8
395,640 - AMB_RS01835 0.70 -0.5
395,640 - AMB_RS01835 0.70 -0.2
395,790 - -0.5
395,927 + +0.7
395,927 + -0.6
395,927 + -1.6
395,927 + -0.2
395,928 - -0.0
395,928 - -0.2
395,928 - -0.8
395,928 - -0.0
395,972 + -0.4
395,972 + +0.1
395,972 + -0.1
395,973 - +0.4
395,973 - -1.2
396,033 + -0.5
396,033 + -0.6
396,270 + +1.6
396,270 + +0.2
396,271 - -0.1
396,271 - +1.2
396,271 - +1.3
396,271 - -0.0
396,271 - -0.2
396,271 - -0.0
396,271 - -0.3
396,579 + AMB_RS01840 0.25 -0.7
396,579 + AMB_RS01840 0.25 +0.1
396,579 + AMB_RS01840 0.25 -0.8
396,579 + AMB_RS01840 0.25 -0.3
396,579 + AMB_RS01840 0.25 -0.4
396,579 + AMB_RS01840 0.25 -1.2
396,580 - AMB_RS01840 0.25 -0.0
396,580 - AMB_RS01840 0.25 -0.0
396,580 - AMB_RS01840 0.25 -0.3
396,759 + AMB_RS01840 0.36 +0.3
396,759 + AMB_RS01840 0.36 -0.1

Or see this region's nucleotide sequence