Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00960 and AMB_RS00965 overlap by 4 nucleotides AMB_RS00965 and AMB_RS00970 are separated by 235 nucleotides AMB_RS00970 and AMB_RS00975 overlap by 1 nucleotides AMB_RS00975 and AMB_RS00980 are separated by 85 nucleotides
AMB_RS00960: AMB_RS00960 - DNA-binding response regulator, at 218,003 to 218,674
_RS00960
AMB_RS00965: AMB_RS00965 - membrane protein, at 218,671 to 218,961
_RS00965
AMB_RS00970: AMB_RS00970 - DUF1924 domain-containing protein, at 219,197 to 220,033
_RS00970
AMB_RS00975: AMB_RS00975 - hypothetical protein, at 220,033 to 220,494
_RS00975
AMB_RS00980: AMB_RS00980 - hypothetical protein, at 220,580 to 221,104
_RS00980
Position (kb) 219
220
221 Strain fitness (log2 ratio) -2
-1
0
1 at 218.382 kb on + strand, within AMB_RS00960 at 218.382 kb on + strand, within AMB_RS00960 at 218.383 kb on - strand, within AMB_RS00960 at 218.383 kb on - strand, within AMB_RS00960 at 218.383 kb on - strand, within AMB_RS00960 at 218.541 kb on + strand, within AMB_RS00960 at 218.541 kb on + strand, within AMB_RS00960 at 218.542 kb on - strand, within AMB_RS00960 at 218.717 kb on + strand, within AMB_RS00965 at 218.717 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 218.720 kb on + strand, within AMB_RS00965 at 219.089 kb on + strand at 219.089 kb on + strand at 219.090 kb on - strand at 219.090 kb on - strand at 219.095 kb on + strand at 219.095 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.138 kb on + strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.139 kb on - strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.269 kb on + strand at 219.270 kb on - strand at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.293 kb on + strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.294 kb on - strand, within AMB_RS00970 at 219.317 kb on + strand, within AMB_RS00970 at 219.318 kb on - strand, within AMB_RS00970 at 219.809 kb on + strand, within AMB_RS00970 at 219.810 kb on - strand, within AMB_RS00970 at 219.851 kb on + strand, within AMB_RS00970 at 219.851 kb on + strand, within AMB_RS00970 at 219.851 kb on + strand, within AMB_RS00970 at 220.007 kb on + strand at 220.007 kb on + strand at 220.007 kb on + strand at 220.007 kb on + strand at 220.007 kb on + strand at 220.007 kb on + strand at 220.008 kb on - strand at 220.008 kb on - strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.016 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.018 kb on + strand at 220.019 kb on - strand at 220.019 kb on - strand at 220.019 kb on - strand at 220.480 kb on + strand at 220.480 kb on + strand at 220.480 kb on + strand at 220.480 kb on + strand at 220.480 kb on + strand at 220.480 kb on + strand at 220.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 218,382 + AMB_RS00960 0.56 +0.4 218,382 + AMB_RS00960 0.56 +0.6 218,383 - AMB_RS00960 0.57 +0.5 218,383 - AMB_RS00960 0.57 +0.2 218,383 - AMB_RS00960 0.57 -0.5 218,541 + AMB_RS00960 0.80 +0.6 218,541 + AMB_RS00960 0.80 +0.0 218,542 - AMB_RS00960 0.80 +1.4 218,717 + AMB_RS00965 0.16 -1.3 218,717 + AMB_RS00965 0.16 -0.3 218,720 + AMB_RS00965 0.17 +0.5 218,720 + AMB_RS00965 0.17 +0.7 218,720 + AMB_RS00965 0.17 +0.2 218,720 + AMB_RS00965 0.17 +1.1 219,089 + -0.1 219,089 + -0.2 219,090 - +0.3 219,090 - -0.2 219,095 + -0.4 219,095 + +0.2 219,138 + -1.1 219,138 + -0.5 219,138 + -0.1 219,138 + +0.9 219,138 + -0.7 219,138 + +0.1 219,139 - -0.7 219,139 - +0.3 219,139 - +1.2 219,139 - -1.4 219,139 - +0.1 219,139 - -0.1 219,144 + +0.2 219,144 + +0.6 219,144 + +0.2 219,269 + +1.3 219,269 + -1.2 219,269 + -0.0 219,269 + -0.9 219,269 + -0.9 219,269 + -0.4 219,269 + -0.2 219,269 + +0.1 219,270 - -0.2 219,293 + AMB_RS00970 0.11 -0.4 219,293 + AMB_RS00970 0.11 -0.4 219,293 + AMB_RS00970 0.11 -0.4 219,293 + AMB_RS00970 0.11 +0.1 219,293 + AMB_RS00970 0.11 -0.5 219,293 + AMB_RS00970 0.11 -0.2 219,293 + AMB_RS00970 0.11 +0.4 219,293 + AMB_RS00970 0.11 -0.2 219,293 + AMB_RS00970 0.11 +1.7 219,293 + AMB_RS00970 0.11 -2.4 219,293 + AMB_RS00970 0.11 -0.2 219,294 - AMB_RS00970 0.12 -0.8 219,294 - AMB_RS00970 0.12 -0.1 219,294 - AMB_RS00970 0.12 -0.8 219,294 - AMB_RS00970 0.12 +1.5 219,294 - AMB_RS00970 0.12 +0.4 219,294 - AMB_RS00970 0.12 +0.9 219,317 + AMB_RS00970 0.14 +1.3 219,318 - AMB_RS00970 0.14 +0.4 219,809 + AMB_RS00970 0.73 +1.1 219,810 - AMB_RS00970 0.73 +1.7 219,851 + AMB_RS00970 0.78 -0.3 219,851 + AMB_RS00970 0.78 -1.2 219,851 + AMB_RS00970 0.78 +0.1 220,007 + +0.2 220,007 + +0.4 220,007 + -1.3 220,007 + -0.4 220,007 + -0.7 220,007 + -1.7 220,008 - +1.5 220,008 - -0.1 220,016 + -0.4 220,016 + -0.7 220,016 + -0.4 220,016 + +0.8 220,016 + +1.4 220,016 + +0.3 220,016 + -0.1 220,016 + -0.3 220,016 + -0.0 220,016 + -1.6 220,016 + -0.4 220,016 + -0.8 220,018 + +0.1 220,018 + +0.6 220,018 + -0.1 220,018 + -0.4 220,018 + -0.4 220,018 + -1.2 220,018 + +0.7 220,018 + -0.6 220,018 + -0.2 220,018 + -0.3 220,018 + -0.2 220,019 - -1.2 220,019 - +0.1 220,019 - -1.0 220,480 + -1.5 220,480 + -0.1 220,480 + -0.2 220,480 + -0.1 220,480 + +0.0 220,480 + +0.5 220,582 - -0.2
Or see this region's nucleotide sequence