Strain Fitness in Magnetospirillum magneticum AMB-1

Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00490

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	30_initial_3
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107,548	-	AMB_RS00485	0.32	-2.4
107,590	+	AMB_RS00485	0.36	+0.1
107,590	+	AMB_RS00485	0.36	-0.4
107,591	-	AMB_RS00485	0.36	-1.1
107,647	-	AMB_RS00485	0.42	-0.2
107,802	+	AMB_RS00485	0.56	-1.0
107,802	+	AMB_RS00485	0.56	-0.2
107,802	+	AMB_RS00485	0.56	-0.1
107,803	-	AMB_RS00485	0.57	-0.7
107,803	-	AMB_RS00485	0.57	+0.6
107,803	-	AMB_RS00485	0.57	+0.9
107,803	-	AMB_RS00485	0.57	-0.2
107,803	-	AMB_RS00485	0.57	+1.1
107,803	-	AMB_RS00485	0.57	+0.2
107,803	-	AMB_RS00485	0.57	+0.1
107,873	-	AMB_RS00485	0.63	-0.1
107,902	+	AMB_RS00485	0.66	+0.7
107,903	-	AMB_RS00485	0.66	+0.1
107,904	+	AMB_RS00485	0.66	-0.4
107,904	+	AMB_RS00485	0.66	+0.2
107,904	+	AMB_RS00485	0.66	-0.6
107,905	-	AMB_RS00485	0.66	-2.0
107,946	+	AMB_RS00485	0.70	-0.8
107,947	-	AMB_RS00485	0.70	-1.5
107,947	-	AMB_RS00485	0.70	-0.1
107,947	-	AMB_RS00485	0.70	-0.3
107,947	-	AMB_RS00485	0.70	+0.2
107,962	-	AMB_RS00485	0.72	-1.2
107,973	+	AMB_RS00485	0.73	-0.4
107,973	+	AMB_RS00485	0.73	-0.1
107,973	+	AMB_RS00485	0.73	-0.3
107,973	+	AMB_RS00485	0.73	-0.3
107,973	+	AMB_RS00485	0.73	+0.5
107,974	-	AMB_RS00485	0.73	+0.3
108,025	+	AMB_RS00485	0.78	-0.6
108,025	+	AMB_RS00485	0.78	-1.1
108,025	+	AMB_RS00485	0.78	+1.1
108,026	-	AMB_RS00485	0.78	-1.5
108,026	-	AMB_RS00485	0.78	-1.2
108,026	-	AMB_RS00485	0.78	-0.1
108,054	+	AMB_RS00485	0.81	-0.3
108,054	+	AMB_RS00485	0.81	-0.2
108,055	-	AMB_RS00485	0.81	-1.0
108,055	-	AMB_RS00485	0.81	-0.0
108,088	+	AMB_RS00485	0.84	-0.0
108,089	-	AMB_RS00485	0.84	+1.2
108,165	-			-0.1
108,167	+			-0.2
108,167	+			+1.8
108,167	+			-0.5
108,167	+			+0.0
108,168	-			+0.6
108,168	-			-0.5
108,168	-			+0.6
108,168	-			-0.3
108,168	-			+0.4
108,168	-			-0.7
108,168	-			+0.3
108,168	-			-0.1
108,195	+			+0.3
108,195	+			-0.8
108,195	+			-0.3
108,196	-			-0.6
108,196	-			-1.2
108,243	+			-1.0
108,243	+			+0.8
108,243	+			+0.1
108,243	+			-0.2
108,243	+			-0.3
108,243	+			-1.4
108,243	+			+0.3
108,243	+			+0.6
108,244	-			+0.1
108,244	-			+0.3
108,244	-			+1.0
108,244	-			+0.3
108,244	-			+0.3
108,244	-			-0.9
108,244	-			-0.5
108,244	-			+0.1
108,244	-			-1.0
108,244	-			-1.6
108,247	+			-0.2
108,247	+			+0.3
108,247	+			-0.5
108,247	+			-0.1
108,247	+			-0.0
108,247	+			+0.5
108,247	+			-0.7
108,247	+			-0.3
108,247	+			-0.2
108,247	+			-1.0
108,247	+			-1.1
108,247	+			+0.1
108,247	+			+0.4
108,248	-			-1.2
108,248	-			-1.0
108,248	-			-2.2
108,248	-			+0.3
108,248	-			-2.9
108,248	-			-0.3
108,248	-			-0.4
108,248	-			-0.6
108,251	-			+0.1
108,305	+			+0.0
108,306	-			-0.3
108,306	-			+0.7
108,343	+			-0.2
108,343	+			+0.1
108,343	+			+0.2
108,343	+			+0.3
108,344	-			-1.0
108,344	-			-0.1
108,344	-			-0.8
108,344	-			-0.0
108,349	-			+0.4
108,349	-			-0.6
108,349	-			+2.0
108,365	-			+0.2
108,413	+			-0.7
108,414	-			+0.2
108,414	-			-0.3
108,440	-			+0.2
108,787	+	AMB_RS00490	0.17	-0.8
108,788	-	AMB_RS00490	0.17	+0.4
108,788	-	AMB_RS00490	0.17	-0.4
108,788	-	AMB_RS00490	0.17	-1.0
108,950	+	AMB_RS00490	0.24	-0.3
108,950	+	AMB_RS00490	0.24	-0.4
108,952	+	AMB_RS00490	0.24	-0.2
108,952	+	AMB_RS00490	0.24	+0.4
108,953	-	AMB_RS00490	0.24	-0.1
108,953	-	AMB_RS00490	0.24	-1.6
108,953	-	AMB_RS00490	0.24	+0.2
108,957	-	AMB_RS00490	0.24	-0.4
108,957	-	AMB_RS00490	0.24	-2.2
108,976	+	AMB_RS00490	0.25	-0.5
108,977	-	AMB_RS00490	0.25	+1.2
109,000	+	AMB_RS00490	0.26	-0.4
109,040	+	AMB_RS00490	0.28	+0.0
109,090	-	AMB_RS00490	0.31	-0.6
109,114	+	AMB_RS00490	0.32	+0.1
109,187	-	AMB_RS00490	0.35	+0.4
109,346	+	AMB_RS00490	0.42	-0.3
109,383	+	AMB_RS00490	0.44	-0.5
109,383	+	AMB_RS00490	0.44	-0.6
109,451	-	AMB_RS00490	0.47	+0.2
109,492	-	AMB_RS00490	0.49	-0.2
109,520	+	AMB_RS00490	0.50	+0.4
109,521	-	AMB_RS00490	0.50	-0.3
109,568	-	AMB_RS00490	0.53	-1.8
109,568	-	AMB_RS00490	0.53	+0.2
109,638	+	AMB_RS00490	0.56	+0.1
109,638	+	AMB_RS00490	0.56	+0.1
109,638	+	AMB_RS00490	0.56	+0.4
109,639	-	AMB_RS00490	0.56	+0.2
109,639	-	AMB_RS00490	0.56	+0.3
109,639	-	AMB_RS00490	0.56	+1.2
109,680	-	AMB_RS00490	0.58	+0.6
109,680	-	AMB_RS00490	0.58	-0.2
109,774	-	AMB_RS00490	0.62	+0.6
109,808	+	AMB_RS00490	0.64	-0.9
109,874	+	AMB_RS00490	0.67	+0.2
109,899	-	AMB_RS00490	0.68	+0.0
109,899	-	AMB_RS00490	0.68	-1.3
109,901	-	AMB_RS00490	0.68	+1.3
109,912	+	AMB_RS00490	0.68	+0.0
109,913	-	AMB_RS00490	0.69	-0.3
109,932	+	AMB_RS00490	0.69	+0.2
109,932	+	AMB_RS00490	0.69	-0.6
109,932	+	AMB_RS00490	0.69	-1.1
109,934	+	AMB_RS00490	0.69	-0.3
109,935	-	AMB_RS00490	0.70	-0.2
110,033	+	AMB_RS00490	0.74	+0.4
110,033	+	AMB_RS00490	0.74	+0.4
110,034	-	AMB_RS00490	0.74	-0.7
110,034	-	AMB_RS00490	0.74	-0.4
110,034	-	AMB_RS00490	0.74	-2.6
110,034	-	AMB_RS00490	0.74	-1.3
110,045	+	AMB_RS00490	0.75	+0.1
110,045	+	AMB_RS00490	0.75	+0.4
110,045	+	AMB_RS00490	0.75	-0.1
110,046	-	AMB_RS00490	0.75	+1.2
110,046	-	AMB_RS00490	0.75	-0.3
110,046	-	AMB_RS00490	0.75	+0.6
110,046	-	AMB_RS00490	0.75	+1.0
110,046	-	AMB_RS00490	0.75	-0.1
110,096	+	AMB_RS00490	0.77	+0.2
110,097	-	AMB_RS00490	0.77	-0.7
110,264	+	AMB_RS00490	0.85	-0.5
110,265	-	AMB_RS00490	0.85	-0.2
110,363	+	AMB_RS00490	0.89	+0.4
110,363	+	AMB_RS00490	0.89	-1.3
110,363	+	AMB_RS00490	0.89	-0.4
110,363	+	AMB_RS00490	0.89	-0.8
110,378	+	AMB_RS00490	0.90	+0.8
110,378	+	AMB_RS00490	0.90	-0.5
110,378	+	AMB_RS00490	0.90	-2.0
110,379	-			+0.8
110,379	-			-0.4
110,412	+			+0.8
110,412	+			+0.3
110,413	-			-0.5
110,413	-			-1.8
110,516	+			-0.5
110,516	+			-0.4
110,516	+			-0.1
110,517	-			+0.4
110,517	-			+1.1
110,546	+			-0.2
110,547	-			-0.1
110,595	-			-1.1
110,644	+			-0.1
110,644	+			-0.8
110,644	+			-2.9
110,645	-			-1.0
110,645	-			-0.1
110,645	-			-0.2
110,645	-			+0.0
111,469	-	AMB_RS00495	0.45	+0.4

Or see this region's nucleotide sequence