Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS06680 and ABIE41_RS06685 are separated by 241 nucleotides ABIE41_RS06685 and ABIE41_RS06690 are separated by 120 nucleotides ABIE41_RS06690 and ABIE41_RS06695 overlap by 4 nucleotides ABIE41_RS06695 and ABIE41_RS06700 overlap by 1 nucleotides
ABIE41_RS06680: ABIE41_RS06680 - SMP-30/gluconolactonase/LRE family protein, at 1,369,717 to 1,370,688
_RS06680
ABIE41_RS06685: ABIE41_RS06685 - hypothetical protein, at 1,370,930 to 1,371,094
_RS06685
ABIE41_RS06690: ABIE41_RS06690 - hypothetical protein, at 1,371,215 to 1,371,550
_RS06690
ABIE41_RS06695: ABIE41_RS06695 - hypothetical protein, at 1,371,547 to 1,371,837
_RS06695
ABIE41_RS06700: ABIE41_RS06700 - Y-family DNA polymerase, at 1,371,837 to 1,373,117
_RS06700
Position (kb) 1371
1372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1370.606 kb on - strand at 1370.606 kb on - strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.609 kb on + strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.610 kb on - strand at 1370.631 kb on + strand at 1370.632 kb on - strand at 1370.664 kb on + strand at 1370.664 kb on + strand at 1370.664 kb on + strand at 1370.665 kb on - strand at 1370.665 kb on - strand at 1370.665 kb on - strand at 1370.665 kb on - strand at 1370.684 kb on - strand at 1370.706 kb on + strand at 1370.706 kb on + strand at 1370.706 kb on + strand at 1370.706 kb on + strand at 1370.706 kb on + strand at 1370.706 kb on + strand at 1370.706 kb on + strand at 1370.706 kb on + strand at 1370.706 kb on + strand at 1370.707 kb on - strand at 1370.707 kb on - strand at 1370.707 kb on - strand at 1370.707 kb on - strand at 1370.707 kb on - strand at 1370.707 kb on - strand at 1370.797 kb on - strand at 1370.797 kb on - strand at 1370.824 kb on + strand at 1370.824 kb on + strand at 1370.825 kb on - strand at 1370.825 kb on - strand at 1370.931 kb on + strand at 1370.931 kb on + strand at 1370.932 kb on - strand at 1371.065 kb on + strand, within ABIE41_RS06685 at 1371.065 kb on + strand, within ABIE41_RS06685 at 1371.065 kb on + strand, within ABIE41_RS06685 at 1371.066 kb on - strand, within ABIE41_RS06685 at 1371.066 kb on - strand, within ABIE41_RS06685 at 1371.066 kb on - strand, within ABIE41_RS06685 at 1371.066 kb on - strand, within ABIE41_RS06685 at 1371.066 kb on - strand, within ABIE41_RS06685 at 1371.066 kb on - strand, within ABIE41_RS06685 at 1371.097 kb on + strand at 1371.097 kb on + strand at 1371.097 kb on + strand at 1371.126 kb on - strand at 1371.126 kb on - strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.216 kb on + strand at 1371.217 kb on - strand at 1371.217 kb on - strand at 1371.217 kb on - strand at 1371.217 kb on - strand at 1371.217 kb on - strand at 1371.217 kb on - strand at 1371.217 kb on - strand at 1371.217 kb on - strand at 1371.217 kb on - strand at 1371.261 kb on + strand, within ABIE41_RS06690 at 1371.261 kb on + strand, within ABIE41_RS06690 at 1371.262 kb on - strand, within ABIE41_RS06690 at 1371.262 kb on - strand, within ABIE41_RS06690 at 1371.262 kb on - strand, within ABIE41_RS06690 at 1371.262 kb on - strand, within ABIE41_RS06690 at 1371.262 kb on - strand, within ABIE41_RS06690 at 1371.335 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.427 kb on + strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.428 kb on - strand, within ABIE41_RS06690 at 1371.534 kb on + strand at 1371.558 kb on - strand at 1371.558 kb on - strand at 1371.579 kb on - strand, within ABIE41_RS06695 at 1371.579 kb on - strand, within ABIE41_RS06695 at 1371.579 kb on - strand, within ABIE41_RS06695 at 1371.579 kb on - strand, within ABIE41_RS06695 at 1371.579 kb on - strand, within ABIE41_RS06695 at 1371.579 kb on - strand, within ABIE41_RS06695 at 1371.607 kb on + strand, within ABIE41_RS06695 at 1371.607 kb on + strand, within ABIE41_RS06695 at 1371.607 kb on + strand, within ABIE41_RS06695 at 1371.608 kb on - strand, within ABIE41_RS06695 at 1371.608 kb on - strand, within ABIE41_RS06695 at 1371.608 kb on - strand, within ABIE41_RS06695 at 1371.608 kb on - strand, within ABIE41_RS06695 at 1371.730 kb on + strand, within ABIE41_RS06695 at 1371.741 kb on + strand, within ABIE41_RS06695 at 1371.741 kb on + strand, within ABIE41_RS06695 at 1371.741 kb on + strand, within ABIE41_RS06695 at 1371.741 kb on + strand, within ABIE41_RS06695 at 1371.742 kb on - strand, within ABIE41_RS06695 at 1371.742 kb on - strand, within ABIE41_RS06695 at 1371.742 kb on - strand, within ABIE41_RS06695 at 1371.742 kb on - strand, within ABIE41_RS06695 at 1371.742 kb on - strand, within ABIE41_RS06695 at 1371.880 kb on + strand at 1371.880 kb on + strand at 1371.881 kb on - strand at 1371.881 kb on - strand at 1371.881 kb on - strand at 1372.105 kb on + strand, within ABIE41_RS06700 at 1372.105 kb on + strand, within ABIE41_RS06700 at 1372.111 kb on + strand, within ABIE41_RS06700 at 1372.111 kb on + strand, within ABIE41_RS06700 at 1372.111 kb on + strand, within ABIE41_RS06700 at 1372.111 kb on + strand, within ABIE41_RS06700 at 1372.111 kb on + strand, within ABIE41_RS06700 at 1372.111 kb on + strand, within ABIE41_RS06700 at 1372.112 kb on - strand, within ABIE41_RS06700 at 1372.112 kb on - strand, within ABIE41_RS06700 at 1372.280 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.281 kb on + strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.282 kb on - strand, within ABIE41_RS06700 at 1372.335 kb on + strand, within ABIE41_RS06700 at 1372.335 kb on + strand, within ABIE41_RS06700 at 1372.335 kb on + strand, within ABIE41_RS06700 at 1372.335 kb on + strand, within ABIE41_RS06700 at 1372.335 kb on + strand, within ABIE41_RS06700 at 1372.336 kb on - strand, within ABIE41_RS06700 at 1372.336 kb on - strand, within ABIE41_RS06700 at 1372.336 kb on - strand, within ABIE41_RS06700 at 1372.336 kb on - strand, within ABIE41_RS06700 at 1372.336 kb on - strand, within ABIE41_RS06700 at 1372.336 kb on - strand, within ABIE41_RS06700 at 1372.336 kb on - strand, within ABIE41_RS06700 at 1372.336 kb on - strand, within ABIE41_RS06700 at 1372.469 kb on + strand, within ABIE41_RS06700 at 1372.469 kb on + strand, within ABIE41_RS06700 at 1372.469 kb on + strand, within ABIE41_RS06700 at 1372.469 kb on + strand, within ABIE41_RS06700 at 1372.470 kb on - strand, within ABIE41_RS06700 at 1372.732 kb on - strand, within ABIE41_RS06700 at 1372.732 kb on - strand, within ABIE41_RS06700 at 1372.816 kb on + strand, within ABIE41_RS06700 at 1372.817 kb on - strand, within ABIE41_RS06700
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 1,370,606 - +0.4 1,370,606 - +1.1 1,370,609 + -1.0 1,370,609 + -2.6 1,370,609 + +0.1 1,370,609 + -1.2 1,370,609 + -1.8 1,370,609 + -1.4 1,370,609 + +1.1 1,370,609 + +0.8 1,370,609 + -0.1 1,370,609 + -0.1 1,370,609 + -0.0 1,370,609 + +0.5 1,370,609 + -1.9 1,370,610 - +2.1 1,370,610 - -2.2 1,370,610 - +0.0 1,370,610 - -0.4 1,370,610 - +0.1 1,370,610 - +0.8 1,370,610 - -2.4 1,370,610 - +1.1 1,370,610 - +1.8 1,370,610 - +2.2 1,370,610 - +1.5 1,370,610 - +1.1 1,370,610 - -1.9 1,370,610 - -0.3 1,370,610 - -1.9 1,370,610 - +0.6 1,370,610 - -1.5 1,370,631 + -1.2 1,370,632 - -0.8 1,370,664 + +2.0 1,370,664 + +1.6 1,370,664 + -0.8 1,370,665 - -0.8 1,370,665 - -1.1 1,370,665 - -2.8 1,370,665 - -0.3 1,370,684 - -0.4 1,370,706 + +0.2 1,370,706 + -1.3 1,370,706 + +1.6 1,370,706 + +0.8 1,370,706 + +0.1 1,370,706 + -1.0 1,370,706 + -0.9 1,370,706 + +0.6 1,370,706 + -2.7 1,370,707 - -0.1 1,370,707 - -0.4 1,370,707 - +1.2 1,370,707 - +0.5 1,370,707 - +0.1 1,370,707 - -1.2 1,370,797 - -1.0 1,370,797 - -0.2 1,370,824 + +1.8 1,370,824 + +0.4 1,370,825 - +0.4 1,370,825 - -0.4 1,370,931 + -0.1 1,370,931 + -0.0 1,370,932 - -0.4 1,371,065 + ABIE41_RS06685 0.82 +1.1 1,371,065 + ABIE41_RS06685 0.82 -0.9 1,371,065 + ABIE41_RS06685 0.82 +0.1 1,371,066 - ABIE41_RS06685 0.82 -2.5 1,371,066 - ABIE41_RS06685 0.82 -0.5 1,371,066 - ABIE41_RS06685 0.82 -0.7 1,371,066 - ABIE41_RS06685 0.82 -0.5 1,371,066 - ABIE41_RS06685 0.82 +0.5 1,371,066 - ABIE41_RS06685 0.82 +0.3 1,371,097 + -0.9 1,371,097 + -0.1 1,371,097 + +0.8 1,371,126 - -0.1 1,371,126 - +1.2 1,371,216 + -0.1 1,371,216 + -0.4 1,371,216 + -1.7 1,371,216 + -1.2 1,371,216 + -0.3 1,371,216 + -1.1 1,371,216 + +0.4 1,371,216 + -0.4 1,371,216 + +2.6 1,371,216 + -0.2 1,371,216 + +0.4 1,371,216 + -1.9 1,371,216 + +1.5 1,371,216 + +0.1 1,371,217 - +0.2 1,371,217 - -0.4 1,371,217 - +0.4 1,371,217 - -1.9 1,371,217 - +0.4 1,371,217 - -0.8 1,371,217 - -0.0 1,371,217 - -0.6 1,371,217 - -0.1 1,371,261 + ABIE41_RS06690 0.14 +0.2 1,371,261 + ABIE41_RS06690 0.14 +0.1 1,371,262 - ABIE41_RS06690 0.14 -0.3 1,371,262 - ABIE41_RS06690 0.14 -2.9 1,371,262 - ABIE41_RS06690 0.14 +1.0 1,371,262 - ABIE41_RS06690 0.14 +1.2 1,371,262 - ABIE41_RS06690 0.14 +0.3 1,371,335 + ABIE41_RS06690 0.36 +2.8 1,371,427 + ABIE41_RS06690 0.63 +0.9 1,371,427 + ABIE41_RS06690 0.63 -0.9 1,371,427 + ABIE41_RS06690 0.63 -0.6 1,371,427 + ABIE41_RS06690 0.63 -1.6 1,371,427 + ABIE41_RS06690 0.63 +0.8 1,371,427 + ABIE41_RS06690 0.63 -0.1 1,371,427 + ABIE41_RS06690 0.63 +0.1 1,371,427 + ABIE41_RS06690 0.63 -0.2 1,371,427 + ABIE41_RS06690 0.63 -0.3 1,371,427 + ABIE41_RS06690 0.63 -0.4 1,371,427 + ABIE41_RS06690 0.63 +1.0 1,371,427 + ABIE41_RS06690 0.63 +0.6 1,371,427 + ABIE41_RS06690 0.63 -0.4 1,371,427 + ABIE41_RS06690 0.63 -0.3 1,371,427 + ABIE41_RS06690 0.63 +2.0 1,371,427 + ABIE41_RS06690 0.63 -3.6 1,371,427 + ABIE41_RS06690 0.63 -1.0 1,371,428 - ABIE41_RS06690 0.63 +0.7 1,371,428 - ABIE41_RS06690 0.63 -1.6 1,371,428 - ABIE41_RS06690 0.63 +1.8 1,371,428 - ABIE41_RS06690 0.63 +1.5 1,371,428 - ABIE41_RS06690 0.63 -1.0 1,371,428 - ABIE41_RS06690 0.63 +0.7 1,371,428 - ABIE41_RS06690 0.63 +1.1 1,371,428 - ABIE41_RS06690 0.63 -0.2 1,371,428 - ABIE41_RS06690 0.63 +0.9 1,371,428 - ABIE41_RS06690 0.63 -2.0 1,371,428 - ABIE41_RS06690 0.63 +0.8 1,371,428 - ABIE41_RS06690 0.63 +0.4 1,371,428 - ABIE41_RS06690 0.63 +0.7 1,371,428 - ABIE41_RS06690 0.63 +1.0 1,371,534 + -1.2 1,371,558 - -2.0 1,371,558 - +0.4 1,371,579 - ABIE41_RS06695 0.11 -0.6 1,371,579 - ABIE41_RS06695 0.11 -0.3 1,371,579 - ABIE41_RS06695 0.11 +0.2 1,371,579 - ABIE41_RS06695 0.11 +1.2 1,371,579 - ABIE41_RS06695 0.11 -0.6 1,371,579 - ABIE41_RS06695 0.11 +0.1 1,371,607 + ABIE41_RS06695 0.21 +0.3 1,371,607 + ABIE41_RS06695 0.21 +0.1 1,371,607 + ABIE41_RS06695 0.21 -1.8 1,371,608 - ABIE41_RS06695 0.21 +1.1 1,371,608 - ABIE41_RS06695 0.21 -2.1 1,371,608 - ABIE41_RS06695 0.21 -0.4 1,371,608 - ABIE41_RS06695 0.21 -0.0 1,371,730 + ABIE41_RS06695 0.63 +0.1 1,371,741 + ABIE41_RS06695 0.67 +1.6 1,371,741 + ABIE41_RS06695 0.67 -0.8 1,371,741 + ABIE41_RS06695 0.67 -0.7 1,371,741 + ABIE41_RS06695 0.67 +0.4 1,371,742 - ABIE41_RS06695 0.67 -0.4 1,371,742 - ABIE41_RS06695 0.67 -1.1 1,371,742 - ABIE41_RS06695 0.67 -0.6 1,371,742 - ABIE41_RS06695 0.67 +1.4 1,371,742 - ABIE41_RS06695 0.67 +1.2 1,371,880 + -1.3 1,371,880 + +0.4 1,371,881 - -0.3 1,371,881 - -0.0 1,371,881 - -1.1 1,372,105 + ABIE41_RS06700 0.21 -0.4 1,372,105 + ABIE41_RS06700 0.21 -0.0 1,372,111 + ABIE41_RS06700 0.21 -0.8 1,372,111 + ABIE41_RS06700 0.21 -1.0 1,372,111 + ABIE41_RS06700 0.21 -1.8 1,372,111 + ABIE41_RS06700 0.21 -0.9 1,372,111 + ABIE41_RS06700 0.21 -0.8 1,372,111 + ABIE41_RS06700 0.21 -2.2 1,372,112 - ABIE41_RS06700 0.21 -1.5 1,372,112 - ABIE41_RS06700 0.21 +0.1 1,372,280 + ABIE41_RS06700 0.35 -1.2 1,372,281 + ABIE41_RS06700 0.35 -0.4 1,372,281 + ABIE41_RS06700 0.35 -0.0 1,372,281 + ABIE41_RS06700 0.35 -0.9 1,372,281 + ABIE41_RS06700 0.35 -0.3 1,372,281 + ABIE41_RS06700 0.35 +0.5 1,372,281 + ABIE41_RS06700 0.35 +0.2 1,372,281 + ABIE41_RS06700 0.35 +0.9 1,372,281 + ABIE41_RS06700 0.35 +1.8 1,372,281 + ABIE41_RS06700 0.35 +0.6 1,372,281 + ABIE41_RS06700 0.35 -0.5 1,372,281 + ABIE41_RS06700 0.35 -0.5 1,372,281 + ABIE41_RS06700 0.35 +0.3 1,372,281 + ABIE41_RS06700 0.35 -0.0 1,372,282 - ABIE41_RS06700 0.35 +1.2 1,372,282 - ABIE41_RS06700 0.35 -3.0 1,372,282 - ABIE41_RS06700 0.35 -0.4 1,372,282 - ABIE41_RS06700 0.35 -1.1 1,372,282 - ABIE41_RS06700 0.35 -2.1 1,372,282 - ABIE41_RS06700 0.35 -0.6 1,372,282 - ABIE41_RS06700 0.35 +1.0 1,372,282 - ABIE41_RS06700 0.35 +0.0 1,372,282 - ABIE41_RS06700 0.35 +1.9 1,372,282 - ABIE41_RS06700 0.35 +2.2 1,372,282 - ABIE41_RS06700 0.35 -0.1 1,372,335 + ABIE41_RS06700 0.39 -0.7 1,372,335 + ABIE41_RS06700 0.39 -2.0 1,372,335 + ABIE41_RS06700 0.39 -0.5 1,372,335 + ABIE41_RS06700 0.39 +0.6 1,372,335 + ABIE41_RS06700 0.39 -0.4 1,372,336 - ABIE41_RS06700 0.39 -0.3 1,372,336 - ABIE41_RS06700 0.39 -0.4 1,372,336 - ABIE41_RS06700 0.39 +0.4 1,372,336 - ABIE41_RS06700 0.39 -1.2 1,372,336 - ABIE41_RS06700 0.39 -1.4 1,372,336 - ABIE41_RS06700 0.39 -1.7 1,372,336 - ABIE41_RS06700 0.39 -0.5 1,372,336 - ABIE41_RS06700 0.39 +0.2 1,372,469 + ABIE41_RS06700 0.49 -3.2 1,372,469 + ABIE41_RS06700 0.49 +0.1 1,372,469 + ABIE41_RS06700 0.49 -0.4 1,372,469 + ABIE41_RS06700 0.49 -1.4 1,372,470 - ABIE41_RS06700 0.49 -2.4 1,372,732 - ABIE41_RS06700 0.70 -0.3 1,372,732 - ABIE41_RS06700 0.70 +0.1 1,372,816 + ABIE41_RS06700 0.76 +0.4 1,372,817 - ABIE41_RS06700 0.77 +0.5
Or see this region's nucleotide sequence