Experiment: L-Methionine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28805 and ABIE40_RS28810 are separated by 51 nucleotides ABIE40_RS28810 and ABIE40_RS28815 overlap by 32 nucleotides ABIE40_RS28815 and ABIE40_RS28820 are separated by 31 nucleotides
ABIE40_RS28805: ABIE40_RS28805 - hypothetical protein, at 465,291 to 466,088
_RS28805
ABIE40_RS28810: ABIE40_RS28810 - ATP-binding protein, at 466,140 to 466,649
_RS28810
ABIE40_RS28815: ABIE40_RS28815 - GNAT family N-acetyltransferase, at 466,618 to 467,124
_RS28815
ABIE40_RS28820: ABIE40_RS28820 - hypothetical protein, at 467,156 to 468,388
_RS28820
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1
2 at 465.789 kb on - strand, within ABIE40_RS28805 at 465.857 kb on + strand, within ABIE40_RS28805 at 465.858 kb on - strand, within ABIE40_RS28805 at 465.918 kb on + strand, within ABIE40_RS28805 at 465.919 kb on - strand, within ABIE40_RS28805 at 465.919 kb on - strand, within ABIE40_RS28805 at 465.959 kb on - strand, within ABIE40_RS28805 at 465.959 kb on - strand, within ABIE40_RS28805 at 465.966 kb on + strand, within ABIE40_RS28805 at 465.967 kb on - strand, within ABIE40_RS28805 at 465.993 kb on + strand, within ABIE40_RS28805 at 465.993 kb on + strand, within ABIE40_RS28805 at 465.993 kb on + strand, within ABIE40_RS28805 at 465.993 kb on + strand, within ABIE40_RS28805 at 465.993 kb on + strand, within ABIE40_RS28805 at 465.994 kb on - strand, within ABIE40_RS28805 at 465.994 kb on - strand, within ABIE40_RS28805 at 466.044 kb on + strand at 466.045 kb on - strand at 466.045 kb on - strand at 466.049 kb on + strand at 466.049 kb on + strand at 466.050 kb on - strand at 466.112 kb on + strand at 466.181 kb on + strand at 466.181 kb on + strand at 466.181 kb on + strand at 466.181 kb on + strand at 466.181 kb on + strand at 466.181 kb on + strand at 466.181 kb on + strand at 466.182 kb on - strand at 466.182 kb on - strand at 466.182 kb on - strand at 466.182 kb on - strand at 466.182 kb on - strand at 466.182 kb on - strand at 466.182 kb on - strand at 466.182 kb on - strand at 466.277 kb on + strand, within ABIE40_RS28810 at 466.310 kb on - strand, within ABIE40_RS28810 at 466.357 kb on + strand, within ABIE40_RS28810 at 466.358 kb on - strand, within ABIE40_RS28810 at 466.445 kb on + strand, within ABIE40_RS28810 at 466.445 kb on + strand, within ABIE40_RS28810 at 466.446 kb on - strand, within ABIE40_RS28810 at 466.447 kb on + strand, within ABIE40_RS28810 at 466.447 kb on + strand, within ABIE40_RS28810 at 466.447 kb on + strand, within ABIE40_RS28810 at 466.447 kb on + strand, within ABIE40_RS28810 at 466.447 kb on + strand, within ABIE40_RS28810 at 466.447 kb on + strand, within ABIE40_RS28810 at 466.448 kb on - strand, within ABIE40_RS28810 at 466.448 kb on - strand, within ABIE40_RS28810 at 466.448 kb on - strand, within ABIE40_RS28810 at 466.448 kb on - strand, within ABIE40_RS28810 at 466.504 kb on + strand, within ABIE40_RS28810 at 466.538 kb on - strand, within ABIE40_RS28810 at 466.610 kb on + strand at 466.610 kb on + strand at 466.611 kb on - strand at 466.611 kb on - strand at 466.619 kb on + strand at 466.655 kb on - strand at 466.665 kb on + strand at 466.666 kb on - strand at 466.670 kb on - strand, within ABIE40_RS28815 at 466.670 kb on - strand, within ABIE40_RS28815 at 466.698 kb on - strand, within ABIE40_RS28815 at 466.777 kb on - strand, within ABIE40_RS28815 at 466.885 kb on - strand, within ABIE40_RS28815 at 466.895 kb on + strand, within ABIE40_RS28815 at 466.896 kb on - strand, within ABIE40_RS28815 at 466.912 kb on - strand, within ABIE40_RS28815 at 466.925 kb on - strand, within ABIE40_RS28815 at 466.952 kb on - strand, within ABIE40_RS28815 at 466.969 kb on + strand, within ABIE40_RS28815 at 466.970 kb on - strand, within ABIE40_RS28815 at 467.015 kb on + strand, within ABIE40_RS28815 at 467.015 kb on + strand, within ABIE40_RS28815 at 467.015 kb on + strand, within ABIE40_RS28815 at 467.016 kb on - strand, within ABIE40_RS28815 at 467.020 kb on - strand, within ABIE40_RS28815 at 467.020 kb on - strand, within ABIE40_RS28815 at 467.020 kb on - strand, within ABIE40_RS28815 at 467.043 kb on + strand, within ABIE40_RS28815 at 467.045 kb on + strand, within ABIE40_RS28815 at 467.045 kb on + strand, within ABIE40_RS28815 at 467.045 kb on + strand, within ABIE40_RS28815 at 467.093 kb on - strand at 467.093 kb on - strand at 467.116 kb on + strand at 467.124 kb on + strand at 467.125 kb on - strand at 467.418 kb on + strand, within ABIE40_RS28820 at 467.425 kb on - strand, within ABIE40_RS28820 at 467.450 kb on - strand, within ABIE40_RS28820 at 467.533 kb on - strand, within ABIE40_RS28820 at 467.537 kb on + strand, within ABIE40_RS28820 at 467.537 kb on + strand, within ABIE40_RS28820 at 467.538 kb on - strand, within ABIE40_RS28820 at 467.566 kb on - strand, within ABIE40_RS28820 at 467.606 kb on + strand, within ABIE40_RS28820 at 467.606 kb on + strand, within ABIE40_RS28820 at 467.611 kb on - strand, within ABIE40_RS28820 at 467.611 kb on - strand, within ABIE40_RS28820 at 467.611 kb on - strand, within ABIE40_RS28820 at 467.671 kb on + strand, within ABIE40_RS28820 at 467.671 kb on + strand, within ABIE40_RS28820 at 467.671 kb on + strand, within ABIE40_RS28820 at 467.672 kb on - strand, within ABIE40_RS28820 at 467.713 kb on + strand, within ABIE40_RS28820 at 467.713 kb on + strand, within ABIE40_RS28820 at 467.714 kb on - strand, within ABIE40_RS28820 at 467.714 kb on - strand, within ABIE40_RS28820 at 467.714 kb on - strand, within ABIE40_RS28820 at 467.714 kb on - strand, within ABIE40_RS28820 at 467.717 kb on + strand, within ABIE40_RS28820 at 467.717 kb on + strand, within ABIE40_RS28820 at 467.719 kb on + strand, within ABIE40_RS28820 at 467.719 kb on + strand, within ABIE40_RS28820 at 467.720 kb on - strand, within ABIE40_RS28820 at 467.720 kb on - strand, within ABIE40_RS28820 at 467.750 kb on - strand, within ABIE40_RS28820 at 467.771 kb on - strand, within ABIE40_RS28820 at 467.771 kb on - strand, within ABIE40_RS28820 at 467.785 kb on + strand, within ABIE40_RS28820 at 467.878 kb on + strand, within ABIE40_RS28820 at 467.884 kb on - strand, within ABIE40_RS28820 at 467.899 kb on + strand, within ABIE40_RS28820 at 467.899 kb on + strand, within ABIE40_RS28820 at 467.902 kb on - strand, within ABIE40_RS28820 at 467.951 kb on + strand, within ABIE40_RS28820
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (C) remove 465,789 - ABIE40_RS28805 0.62 -0.5 465,857 + ABIE40_RS28805 0.71 -0.4 465,858 - ABIE40_RS28805 0.71 -0.1 465,918 + ABIE40_RS28805 0.79 +0.0 465,919 - ABIE40_RS28805 0.79 +1.0 465,919 - ABIE40_RS28805 0.79 +0.5 465,959 - ABIE40_RS28805 0.84 +0.1 465,959 - ABIE40_RS28805 0.84 -0.5 465,966 + ABIE40_RS28805 0.85 +1.1 465,967 - ABIE40_RS28805 0.85 -1.3 465,993 + ABIE40_RS28805 0.88 -0.7 465,993 + ABIE40_RS28805 0.88 -0.3 465,993 + ABIE40_RS28805 0.88 -0.8 465,993 + ABIE40_RS28805 0.88 +0.6 465,993 + ABIE40_RS28805 0.88 -1.0 465,994 - ABIE40_RS28805 0.88 -0.5 465,994 - ABIE40_RS28805 0.88 +2.0 466,044 + -1.4 466,045 - -0.9 466,045 - +0.5 466,049 + -0.4 466,049 + -1.7 466,050 - -0.4 466,112 + +0.2 466,181 + -0.1 466,181 + -0.8 466,181 + -0.9 466,181 + -0.3 466,181 + -1.4 466,181 + +0.1 466,181 + -1.9 466,182 - -0.4 466,182 - -0.6 466,182 - +0.3 466,182 - -0.4 466,182 - -0.4 466,182 - -0.8 466,182 - -0.3 466,182 - +0.1 466,277 + ABIE40_RS28810 0.27 -0.3 466,310 - ABIE40_RS28810 0.33 +0.3 466,357 + ABIE40_RS28810 0.43 +1.2 466,358 - ABIE40_RS28810 0.43 -0.5 466,445 + ABIE40_RS28810 0.60 -0.0 466,445 + ABIE40_RS28810 0.60 -0.5 466,446 - ABIE40_RS28810 0.60 +1.6 466,447 + ABIE40_RS28810 0.60 +1.3 466,447 + ABIE40_RS28810 0.60 +0.6 466,447 + ABIE40_RS28810 0.60 +0.7 466,447 + ABIE40_RS28810 0.60 +1.8 466,447 + ABIE40_RS28810 0.60 -0.1 466,447 + ABIE40_RS28810 0.60 -0.6 466,448 - ABIE40_RS28810 0.60 +0.7 466,448 - ABIE40_RS28810 0.60 +0.5 466,448 - ABIE40_RS28810 0.60 -0.2 466,448 - ABIE40_RS28810 0.60 +0.6 466,504 + ABIE40_RS28810 0.71 +0.4 466,538 - ABIE40_RS28810 0.78 +0.9 466,610 + +1.4 466,610 + +0.6 466,611 - -0.2 466,611 - +0.9 466,619 + -0.4 466,655 - -0.5 466,665 + -1.7 466,666 - -0.2 466,670 - ABIE40_RS28815 0.10 +0.4 466,670 - ABIE40_RS28815 0.10 -0.8 466,698 - ABIE40_RS28815 0.16 -0.6 466,777 - ABIE40_RS28815 0.31 -1.3 466,885 - ABIE40_RS28815 0.53 -0.2 466,895 + ABIE40_RS28815 0.55 -1.2 466,896 - ABIE40_RS28815 0.55 -2.5 466,912 - ABIE40_RS28815 0.58 -2.5 466,925 - ABIE40_RS28815 0.61 -1.1 466,952 - ABIE40_RS28815 0.66 -2.0 466,969 + ABIE40_RS28815 0.69 -2.1 466,970 - ABIE40_RS28815 0.69 -0.2 467,015 + ABIE40_RS28815 0.78 -0.4 467,015 + ABIE40_RS28815 0.78 -0.6 467,015 + ABIE40_RS28815 0.78 -0.3 467,016 - ABIE40_RS28815 0.79 -1.2 467,020 - ABIE40_RS28815 0.79 -1.6 467,020 - ABIE40_RS28815 0.79 -1.3 467,020 - ABIE40_RS28815 0.79 -0.2 467,043 + ABIE40_RS28815 0.84 -0.4 467,045 + ABIE40_RS28815 0.84 -1.7 467,045 + ABIE40_RS28815 0.84 -0.7 467,045 + ABIE40_RS28815 0.84 -1.0 467,093 - -0.2 467,093 - +0.0 467,116 + -2.2 467,124 + -1.7 467,125 - -0.5 467,418 + ABIE40_RS28820 0.21 -0.8 467,425 - ABIE40_RS28820 0.22 -0.3 467,450 - ABIE40_RS28820 0.24 -0.7 467,533 - ABIE40_RS28820 0.31 -0.5 467,537 + ABIE40_RS28820 0.31 -2.2 467,537 + ABIE40_RS28820 0.31 +0.3 467,538 - ABIE40_RS28820 0.31 -0.4 467,566 - ABIE40_RS28820 0.33 -0.1 467,606 + ABIE40_RS28820 0.36 +0.6 467,606 + ABIE40_RS28820 0.36 +0.0 467,611 - ABIE40_RS28820 0.37 +1.0 467,611 - ABIE40_RS28820 0.37 +0.2 467,611 - ABIE40_RS28820 0.37 -0.0 467,671 + ABIE40_RS28820 0.42 +1.0 467,671 + ABIE40_RS28820 0.42 +0.2 467,671 + ABIE40_RS28820 0.42 -0.1 467,672 - ABIE40_RS28820 0.42 -0.1 467,713 + ABIE40_RS28820 0.45 -1.7 467,713 + ABIE40_RS28820 0.45 +0.8 467,714 - ABIE40_RS28820 0.45 -0.2 467,714 - ABIE40_RS28820 0.45 +0.7 467,714 - ABIE40_RS28820 0.45 -0.5 467,714 - ABIE40_RS28820 0.45 +1.0 467,717 + ABIE40_RS28820 0.45 +0.9 467,717 + ABIE40_RS28820 0.45 -1.1 467,719 + ABIE40_RS28820 0.46 +0.2 467,719 + ABIE40_RS28820 0.46 -1.5 467,720 - ABIE40_RS28820 0.46 +0.1 467,720 - ABIE40_RS28820 0.46 +0.0 467,750 - ABIE40_RS28820 0.48 -0.7 467,771 - ABIE40_RS28820 0.50 -0.2 467,771 - ABIE40_RS28820 0.50 +0.9 467,785 + ABIE40_RS28820 0.51 -0.7 467,878 + ABIE40_RS28820 0.59 +0.3 467,884 - ABIE40_RS28820 0.59 -0.0 467,899 + ABIE40_RS28820 0.60 -0.2 467,899 + ABIE40_RS28820 0.60 -1.2 467,902 - ABIE40_RS28820 0.61 -1.1 467,951 + ABIE40_RS28820 0.64 -0.6
Or see this region's nucleotide sequence