Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS24130

Experiment: L-Methionine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS24125 and ABIE40_RS24130 are separated by 39 nucleotidesABIE40_RS24130 and ABIE40_RS24135 overlap by 4 nucleotidesABIE40_RS24135 and ABIE40_RS24140 are separated by 51 nucleotides ABIE40_RS24125: ABIE40_RS24125 - ABC transporter ATP-binding protein, at 970,798 to 972,507 _RS24125 ABIE40_RS24130: ABIE40_RS24130 - ABC transporter permease, at 972,547 to 972,996 _RS24130 ABIE40_RS24135: ABIE40_RS24135 - ABC transporter permease, at 972,993 to 973,931 _RS24135 ABIE40_RS24140: ABIE40_RS24140 - proline iminopeptidase-family hydrolase, at 973,983 to 974,873 _RS24140 Position (kb) 972 973Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 971.753 kb on + strand, within ABIE40_RS24125at 971.995 kb on + strand, within ABIE40_RS24125at 971.996 kb on - strand, within ABIE40_RS24125at 972.059 kb on + strand, within ABIE40_RS24125at 972.059 kb on + strand, within ABIE40_RS24125at 972.060 kb on - strand, within ABIE40_RS24125at 972.060 kb on - strand, within ABIE40_RS24125at 972.060 kb on - strand, within ABIE40_RS24125at 972.146 kb on + strand, within ABIE40_RS24125at 972.515 kb on + strandat 972.515 kb on + strandat 972.515 kb on + strandat 972.546 kb on + strandat 972.548 kb on + strandat 972.548 kb on + strandat 972.548 kb on + strandat 972.548 kb on + strandat 972.548 kb on + strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.852 kb on + strand, within ABIE40_RS24130at 972.860 kb on + strand, within ABIE40_RS24130at 972.860 kb on + strand, within ABIE40_RS24130at 972.996 kb on + strandat 972.996 kb on + strandat 972.996 kb on + strandat 972.996 kb on + strandat 972.997 kb on - strandat 972.997 kb on - strandat 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.100 kb on - strand, within ABIE40_RS24135at 973.100 kb on - strand, within ABIE40_RS24135at 973.100 kb on - strand, within ABIE40_RS24135at 973.224 kb on + strand, within ABIE40_RS24135at 973.440 kb on + strand, within ABIE40_RS24135at 973.441 kb on - strand, within ABIE40_RS24135at 973.441 kb on - strand, within ABIE40_RS24135at 973.678 kb on + strand, within ABIE40_RS24135at 973.678 kb on + strand, within ABIE40_RS24135at 973.678 kb on + strand, within ABIE40_RS24135at 973.727 kb on - strand, within ABIE40_RS24135at 973.732 kb on + strand, within ABIE40_RS24135at 973.732 kb on + strand, within ABIE40_RS24135at 973.733 kb on - strand, within ABIE40_RS24135at 973.733 kb on - strand, within ABIE40_RS24135at 973.733 kb on - strand, within ABIE40_RS24135at 973.763 kb on - strand, within ABIE40_RS24135at 973.775 kb on + strand, within ABIE40_RS24135at 973.815 kb on - strand, within ABIE40_RS24135at 973.815 kb on - strand, within ABIE40_RS24135at 973.868 kb on + strandat 973.919 kb on + strandat 973.919 kb on + strandat 973.921 kb on + strandat 973.922 kb on - strandat 973.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (C)
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971,753 + ABIE40_RS24125 0.56 +0.4
971,995 + ABIE40_RS24125 0.70 -0.7
971,996 - ABIE40_RS24125 0.70 -0.4
972,059 + ABIE40_RS24125 0.74 -0.7
972,059 + ABIE40_RS24125 0.74 -0.2
972,060 - ABIE40_RS24125 0.74 +0.2
972,060 - ABIE40_RS24125 0.74 -0.8
972,060 - ABIE40_RS24125 0.74 +1.0
972,146 + ABIE40_RS24125 0.79 -0.3
972,515 + -1.4
972,515 + +0.1
972,515 + -0.1
972,546 + +0.1
972,548 + +0.3
972,548 + -0.3
972,548 + +0.3
972,548 + +0.1
972,548 + +1.0
972,549 - +1.2
972,549 - -0.3
972,549 - -1.4
972,549 - +0.4
972,549 - +0.0
972,549 - +1.0
972,549 - +1.1
972,549 - -0.2
972,549 - +0.7
972,549 - +1.1
972,852 + ABIE40_RS24130 0.68 -0.7
972,860 + ABIE40_RS24130 0.70 -0.3
972,860 + ABIE40_RS24130 0.70 -3.3
972,996 + -0.9
972,996 + -0.1
972,996 + +0.1
972,996 + -0.6
972,997 - -1.3
972,997 - -1.4
973,097 + ABIE40_RS24135 0.11 +0.3
973,097 + ABIE40_RS24135 0.11 +0.2
973,097 + ABIE40_RS24135 0.11 +0.5
973,097 + ABIE40_RS24135 0.11 -0.8
973,097 + ABIE40_RS24135 0.11 +0.7
973,097 + ABIE40_RS24135 0.11 -1.2
973,097 + ABIE40_RS24135 0.11 -0.2
973,097 + ABIE40_RS24135 0.11 -0.0
973,097 + ABIE40_RS24135 0.11 +0.3
973,097 + ABIE40_RS24135 0.11 +0.3
973,097 + ABIE40_RS24135 0.11 -0.2
973,097 + ABIE40_RS24135 0.11 -0.0
973,097 + ABIE40_RS24135 0.11 -0.6
973,097 + ABIE40_RS24135 0.11 +0.9
973,098 - ABIE40_RS24135 0.11 -0.2
973,098 - ABIE40_RS24135 0.11 -0.9
973,098 - ABIE40_RS24135 0.11 +1.9
973,098 - ABIE40_RS24135 0.11 +0.0
973,098 - ABIE40_RS24135 0.11 +0.1
973,098 - ABIE40_RS24135 0.11 -0.2
973,098 - ABIE40_RS24135 0.11 -1.2
973,098 - ABIE40_RS24135 0.11 -0.4
973,098 - ABIE40_RS24135 0.11 +0.3
973,098 - ABIE40_RS24135 0.11 -0.5
973,099 + ABIE40_RS24135 0.11 +0.1
973,099 + ABIE40_RS24135 0.11 +0.3
973,099 + ABIE40_RS24135 0.11 -0.2
973,099 + ABIE40_RS24135 0.11 -0.2
973,099 + ABIE40_RS24135 0.11 +3.1
973,099 + ABIE40_RS24135 0.11 -0.7
973,100 - ABIE40_RS24135 0.11 -0.4
973,100 - ABIE40_RS24135 0.11 -0.8
973,100 - ABIE40_RS24135 0.11 -1.2
973,224 + ABIE40_RS24135 0.25 +1.7
973,440 + ABIE40_RS24135 0.48 +0.1
973,441 - ABIE40_RS24135 0.48 -0.6
973,441 - ABIE40_RS24135 0.48 +0.8
973,678 + ABIE40_RS24135 0.73 +0.3
973,678 + ABIE40_RS24135 0.73 +0.1
973,678 + ABIE40_RS24135 0.73 -0.6
973,727 - ABIE40_RS24135 0.78 -2.1
973,732 + ABIE40_RS24135 0.79 +0.5
973,732 + ABIE40_RS24135 0.79 +0.9
973,733 - ABIE40_RS24135 0.79 -1.0
973,733 - ABIE40_RS24135 0.79 +0.8
973,733 - ABIE40_RS24135 0.79 -1.3
973,763 - ABIE40_RS24135 0.82 +0.7
973,775 + ABIE40_RS24135 0.83 +0.8
973,815 - ABIE40_RS24135 0.88 -1.5
973,815 - ABIE40_RS24135 0.88 +0.7
973,868 + -0.2
973,919 + -0.3
973,919 + +0.9
973,921 + -0.1
973,922 - -0.6
973,975 - -1.3

Or see this region's nucleotide sequence