Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29165 and ABID97_RS29170 are separated by 26 nucleotides ABID97_RS29170 and ABID97_RS29175 are separated by 29 nucleotides ABID97_RS29175 and ABID97_RS29180 are separated by 48 nucleotides
ABID97_RS29165: ABID97_RS29165 - MFS transporter, at 751,423 to 752,805
_RS29165
ABID97_RS29170: ABID97_RS29170 - alpha/beta hydrolase, at 752,832 to 753,800
_RS29170
ABID97_RS29175: ABID97_RS29175 - SDR family oxidoreductase, at 753,830 to 754,534
_RS29175
ABID97_RS29180: ABID97_RS29180 - NADP-dependent oxidoreductase, at 754,583 to 755,584
_RS29180
Position (kb) 752
753
754 Strain fitness (log2 ratio) -1
0
1 at 751.936 kb on + strand, within ABID97_RS29165 at 751.937 kb on - strand, within ABID97_RS29165 at 752.395 kb on + strand, within ABID97_RS29165 at 752.911 kb on + strand at 753.079 kb on + strand, within ABID97_RS29170 at 753.079 kb on + strand, within ABID97_RS29170 at 753.510 kb on - strand, within ABID97_RS29170 at 753.849 kb on + strand at 753.849 kb on + strand at 753.850 kb on - strand at 754.011 kb on + strand, within ABID97_RS29175 at 754.012 kb on - strand, within ABID97_RS29175 at 754.632 kb on + strand at 754.762 kb on - strand, within ABID97_RS29180
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 751,936 + ABID97_RS29165 0.37 -0.1 751,937 - ABID97_RS29165 0.37 +0.1 752,395 + ABID97_RS29165 0.70 -0.3 752,911 + -1.5 753,079 + ABID97_RS29170 0.25 -0.4 753,079 + ABID97_RS29170 0.25 +0.7 753,510 - ABID97_RS29170 0.70 -1.6 753,849 + +0.2 753,849 + +0.1 753,850 - +0.0 754,011 + ABID97_RS29175 0.26 +1.5 754,012 - ABID97_RS29175 0.26 -0.5 754,632 + +0.3 754,762 - ABID97_RS29180 0.18 -1.2
Or see this region's nucleotide sequence