Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28270

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS28260 and ABID97_RS28265 overlap by 4 nucleotidesABID97_RS28265 and ABID97_RS28270 overlap by 4 nucleotidesABID97_RS28270 and ABID97_RS28275 are separated by 66 nucleotides ABID97_RS28260: ABID97_RS28260 - enoyl-CoA hydratase/isomerase family protein, at 572,647 to 573,453 _RS28260 ABID97_RS28265: ABID97_RS28265 - OB-fold domain-containing protein, at 573,450 to 573,839 _RS28265 ABID97_RS28270: ABID97_RS28270 - thiolase, at 573,836 to 575,014 _RS28270 ABID97_RS28275: ABID97_RS28275 - tripartite tricarboxylate transporter substrate binding protein, at 575,081 to 576,055 _RS28275 Position (kb) 573 574 575 576Strain fitness (log2 ratio) -1 0 1at 573.549 kb on + strand, within ABID97_RS28265at 574.315 kb on - strand, within ABID97_RS28270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
573,549 + ABID97_RS28265 0.25 -0.7
574,315 - ABID97_RS28270 0.41 -1.5

Or see this region's nucleotide sequence