Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27595

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27590 and ABID97_RS27595 are separated by 32 nucleotidesABID97_RS27595 and ABID97_RS27600 are separated by 10 nucleotides ABID97_RS27590: ABID97_RS27590 - L-glutamate gamma-semialdehyde dehydrogenase, at 436,389 to 437,939 _RS27590 ABID97_RS27595: ABID97_RS27595 - pyridoxal phosphate-dependent aminotransferase, at 437,972 to 439,174 _RS27595 ABID97_RS27600: ABID97_RS27600 - FAD-binding oxidoreductase, at 439,185 to 440,348 _RS27600 Position (kb) 437 438 439 440Strain fitness (log2 ratio) -1 0 1at 437.091 kb on + strand, within ABID97_RS27590at 437.392 kb on - strand, within ABID97_RS27590at 437.892 kb on + strandat 438.236 kb on + strand, within ABID97_RS27595at 438.945 kb on - strand, within ABID97_RS27595at 438.951 kb on - strand, within ABID97_RS27595at 438.951 kb on - strand, within ABID97_RS27595at 438.954 kb on + strand, within ABID97_RS27595at 439.103 kb on + strandat 439.462 kb on - strand, within ABID97_RS27600at 439.698 kb on + strand, within ABID97_RS27600at 440.121 kb on + strand, within ABID97_RS27600

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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437,091 + ABID97_RS27590 0.45 +1.0
437,392 - ABID97_RS27590 0.65 +0.2
437,892 + +0.0
438,236 + ABID97_RS27595 0.22 -0.3
438,945 - ABID97_RS27595 0.81 -0.4
438,951 - ABID97_RS27595 0.81 -0.4
438,951 - ABID97_RS27595 0.81 +0.3
438,954 + ABID97_RS27595 0.82 -0.4
439,103 + -0.2
439,462 - ABID97_RS27600 0.24 -0.7
439,698 + ABID97_RS27600 0.44 +0.1
440,121 + ABID97_RS27600 0.80 +0.3

Or see this region's nucleotide sequence