Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26740

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26730 and ABID97_RS26735 are separated by 11 nucleotidesABID97_RS26735 and ABID97_RS26740 are separated by 37 nucleotidesABID97_RS26740 and ABID97_RS26745 are separated by 49 nucleotides ABID97_RS26730: ABID97_RS26730 - TetR family transcriptional regulator C-terminal domain-containing protein, at 270,242 to 270,886 _RS26730 ABID97_RS26735: ABID97_RS26735 - enoyl-CoA hydratase, at 270,898 to 271,779 _RS26735 ABID97_RS26740: ABID97_RS26740 - CoA transferase, at 271,817 to 273,070 _RS26740 ABID97_RS26745: ABID97_RS26745 - TetR/AcrR family transcriptional regulator, at 273,120 to 273,755 _RS26745 Position (kb) 271 272 273 274Strain fitness (log2 ratio) -2 -1 0 1at 271.783 kb on + strandat 271.783 kb on + strandat 271.882 kb on - strandat 271.882 kb on - strandat 272.685 kb on + strand, within ABID97_RS26740at 272.685 kb on + strand, within ABID97_RS26740

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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271,783 + -1.7
271,783 + -0.4
271,882 - -0.8
271,882 - +0.5
272,685 + ABID97_RS26740 0.69 -1.0
272,685 + ABID97_RS26740 0.69 -2.1

Or see this region's nucleotide sequence