Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25710 and ABID97_RS25715 overlap by 4 nucleotides ABID97_RS25715 and ABID97_RS25720 are separated by 20 nucleotides ABID97_RS25720 and ABID97_RS25725 are separated by 55 nucleotides
ABID97_RS25710: ABID97_RS25710 - aldehyde dehydrogenase family protein, at 61,177 to 62,685
_RS25710
ABID97_RS25715: ABID97_RS25715 - cupin domain-containing protein, at 62,682 to 63,401
_RS25715
ABID97_RS25720: ABID97_RS25720 - FAD-binding oxidoreductase, at 63,422 to 64,747
_RS25720
ABID97_RS25725: ABID97_RS25725 - peptide ABC transporter substrate-binding protein, at 64,803 to 66,476
_RS25725
Position (kb) 63
64
65 Strain fitness (log2 ratio) -1
0
1
2
3 at 62.585 kb on - strand at 62.585 kb on - strand at 63.375 kb on + strand at 63.375 kb on + strand at 63.729 kb on - strand, within ABID97_RS25720 at 63.729 kb on - strand, within ABID97_RS25720 at 64.751 kb on + strand at 64.752 kb on - strand at 64.864 kb on + strand at 64.865 kb on - strand at 64.865 kb on - strand at 65.278 kb on - strand, within ABID97_RS25725 at 65.553 kb on + strand, within ABID97_RS25725 at 65.641 kb on - strand, within ABID97_RS25725
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 62,585 - +0.2 62,585 - -0.7 63,375 + +0.2 63,375 + +0.3 63,729 - ABID97_RS25720 0.23 +1.0 63,729 - ABID97_RS25720 0.23 +2.0 64,751 + -0.8 64,752 - +0.2 64,864 + -0.3 64,865 - +0.4 64,865 - +2.1 65,278 - ABID97_RS25725 0.28 +0.3 65,553 + ABID97_RS25725 0.45 +0.5 65,641 - ABID97_RS25725 0.50 +2.9
Or see this region's nucleotide sequence