Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25560

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25550 and ABID97_RS25555 are separated by 26 nucleotidesABID97_RS25555 and ABID97_RS25560 are separated by 38 nucleotidesABID97_RS25560 and ABID97_RS25565 are separated by 43 nucleotidesABID97_RS25565 and ABID97_RS25570 overlap by 12 nucleotides ABID97_RS25550: ABID97_RS25550 - alpha/beta fold hydrolase, at 29,974 to 31,188 _RS25550 ABID97_RS25555: ABID97_RS25555 - alpha/beta hydrolase, at 31,215 to 32,036 _RS25555 ABID97_RS25560: ABID97_RS25560 - alpha/beta hydrolase, at 32,075 to 33,010 _RS25560 ABID97_RS25565: ABID97_RS25565 - NADP-dependent oxidoreductase, at 33,054 to 33,998 _RS25565 ABID97_RS25570: ABID97_RS25570 - alkene reductase, at 33,987 to 35,048 _RS25570 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1at 32.140 kb on + strandat 32.140 kb on + strandat 32.193 kb on - strand, within ABID97_RS25560at 32.474 kb on + strand, within ABID97_RS25560at 33.055 kb on + strandat 33.347 kb on - strand, within ABID97_RS25565at 33.437 kb on - strand, within ABID97_RS25565at 33.688 kb on + strand, within ABID97_RS25565at 33.689 kb on - strand, within ABID97_RS25565

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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32,140 + +0.7
32,140 + -0.6
32,193 - ABID97_RS25560 0.13 +0.7
32,474 + ABID97_RS25560 0.43 -1.0
33,055 + +0.6
33,347 - ABID97_RS25565 0.31 +0.2
33,437 - ABID97_RS25565 0.41 +0.0
33,688 + ABID97_RS25565 0.67 -0.5
33,689 - ABID97_RS25565 0.67 -0.3

Or see this region's nucleotide sequence