Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24295

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24290 and ABID97_RS24295 overlap by 8 nucleotidesABID97_RS24295 and ABID97_RS24300 overlap by 4 nucleotides ABID97_RS24290: ABID97_RS24290 - CpaF family protein, at 5,022,920 to 5,024,236 _RS24290 ABID97_RS24295: ABID97_RS24295 - type II secretion system F family protein, at 5,024,229 to 5,025,221 _RS24295 ABID97_RS24300: ABID97_RS24300 - type II secretion system F family protein, at 5,025,218 to 5,026,183 _RS24300 Position (kb) 5024 5025 5026Strain fitness (log2 ratio) -1 0 1at 5024.097 kb on - strand, within ABID97_RS24290at 5024.715 kb on + strand, within ABID97_RS24295at 5025.378 kb on + strand, within ABID97_RS24300at 5025.563 kb on - strand, within ABID97_RS24300at 5025.563 kb on - strand, within ABID97_RS24300at 5025.563 kb on - strand, within ABID97_RS24300at 5025.596 kb on + strand, within ABID97_RS24300

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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5,024,097 - ABID97_RS24290 0.89 -0.5
5,024,715 + ABID97_RS24295 0.49 -0.8
5,025,378 + ABID97_RS24300 0.17 -1.4
5,025,563 - ABID97_RS24300 0.36 +0.1
5,025,563 - ABID97_RS24300 0.36 -0.0
5,025,563 - ABID97_RS24300 0.36 +0.0
5,025,596 + ABID97_RS24300 0.39 -0.2

Or see this region's nucleotide sequence