Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22060

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22055 and ABID97_RS22060 are separated by 97 nucleotidesABID97_RS22060 and ABID97_RS22065 overlap by 40 nucleotides ABID97_RS22055: ABID97_RS22055 - LysR substrate-binding domain-containing protein, at 4,562,926 to 4,563,861 _RS22055 ABID97_RS22060: ABID97_RS22060 - MFS transporter, at 4,563,959 to 4,565,254 _RS22060 ABID97_RS22065: ABID97_RS22065 - adenosine deaminase, at 4,565,215 to 4,566,279 _RS22065 Position (kb) 4563 4564 4565 4566Strain fitness (log2 ratio) -1 0 1 2at 4563.647 kb on + strand, within ABID97_RS22055at 4563.648 kb on - strand, within ABID97_RS22055at 4565.007 kb on - strand, within ABID97_RS22060at 4565.253 kb on - strandat 4565.373 kb on - strand, within ABID97_RS22065at 4565.612 kb on + strand, within ABID97_RS22065at 4565.612 kb on + strand, within ABID97_RS22065at 4565.996 kb on + strand, within ABID97_RS22065at 4565.997 kb on - strand, within ABID97_RS22065at 4566.035 kb on + strand, within ABID97_RS22065at 4566.038 kb on + strand, within ABID97_RS22065at 4566.038 kb on + strand, within ABID97_RS22065at 4566.038 kb on + strand, within ABID97_RS22065at 4566.038 kb on + strand, within ABID97_RS22065at 4566.038 kb on + strand, within ABID97_RS22065at 4566.038 kb on + strand, within ABID97_RS22065at 4566.038 kb on + strand, within ABID97_RS22065at 4566.039 kb on - strand, within ABID97_RS22065at 4566.039 kb on - strand, within ABID97_RS22065at 4566.039 kb on - strandat 4566.039 kb on - strand, within ABID97_RS22065at 4566.074 kb on + strand, within ABID97_RS22065at 4566.074 kb on + strand, within ABID97_RS22065at 4566.075 kb on - strand, within ABID97_RS22065at 4566.105 kb on - strand, within ABID97_RS22065

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,563,647 + ABID97_RS22055 0.77 -0.6
4,563,648 - ABID97_RS22055 0.77 +0.2
4,565,007 - ABID97_RS22060 0.81 -0.8
4,565,253 - +0.5
4,565,373 - ABID97_RS22065 0.15 -0.2
4,565,612 + ABID97_RS22065 0.37 -0.3
4,565,612 + ABID97_RS22065 0.37 -0.6
4,565,996 + ABID97_RS22065 0.73 +1.2
4,565,997 - ABID97_RS22065 0.73 -0.7
4,566,035 + ABID97_RS22065 0.77 -0.7
4,566,038 + ABID97_RS22065 0.77 +1.1
4,566,038 + ABID97_RS22065 0.77 +0.3
4,566,038 + ABID97_RS22065 0.77 -0.4
4,566,038 + ABID97_RS22065 0.77 -0.2
4,566,038 + ABID97_RS22065 0.77 +0.8
4,566,038 + ABID97_RS22065 0.77 +1.9
4,566,038 + ABID97_RS22065 0.77 -0.8
4,566,039 - ABID97_RS22065 0.77 +0.8
4,566,039 - ABID97_RS22065 0.77 -0.8
4,566,039 - +2.2
4,566,039 - ABID97_RS22065 0.77 +0.3
4,566,074 + ABID97_RS22065 0.81 +1.4
4,566,074 + ABID97_RS22065 0.81 -0.3
4,566,075 - ABID97_RS22065 0.81 +0.8
4,566,105 - ABID97_RS22065 0.84 -0.1

Or see this region's nucleotide sequence