Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20405

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20400 and ABID97_RS20405 overlap by 8 nucleotidesABID97_RS20405 and ABID97_RS20410 are separated by 75 nucleotides ABID97_RS20400: ABID97_RS20400 - efflux transporter outer membrane subunit, at 4,211,692 to 4,213,170 _RS20400 ABID97_RS20405: ABID97_RS20405 - MarR family transcriptional regulator, at 4,213,163 to 4,213,696 _RS20405 ABID97_RS20410: ABID97_RS20410 - ABC transporter transmembrane domain-containing protein, at 4,213,772 to 4,215,556 _RS20410 Position (kb) 4213 4214Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4212.207 kb on - strand, within ABID97_RS20400at 4212.207 kb on - strand, within ABID97_RS20400at 4212.207 kb on - strand, within ABID97_RS20400at 4212.207 kb on - strand, within ABID97_RS20400at 4212.603 kb on - strand, within ABID97_RS20400at 4212.786 kb on - strand, within ABID97_RS20400at 4212.791 kb on + strand, within ABID97_RS20400at 4212.791 kb on + strand, within ABID97_RS20400at 4212.791 kb on + strand, within ABID97_RS20400at 4212.791 kb on + strand, within ABID97_RS20400at 4212.791 kb on + strand, within ABID97_RS20400at 4212.791 kb on + strand, within ABID97_RS20400at 4212.791 kb on + strand, within ABID97_RS20400at 4212.792 kb on - strand, within ABID97_RS20400at 4212.792 kb on - strand, within ABID97_RS20400at 4212.792 kb on - strand, within ABID97_RS20400at 4212.792 kb on - strand, within ABID97_RS20400at 4212.792 kb on - strand, within ABID97_RS20400at 4213.494 kb on + strand, within ABID97_RS20405at 4213.495 kb on - strand, within ABID97_RS20405at 4213.591 kb on - strand, within ABID97_RS20405at 4213.614 kb on + strand, within ABID97_RS20405at 4213.615 kb on - strand, within ABID97_RS20405at 4213.615 kb on - strand, within ABID97_RS20405at 4213.629 kb on + strand, within ABID97_RS20405at 4214.054 kb on + strand, within ABID97_RS20410at 4214.054 kb on + strand, within ABID97_RS20410at 4214.054 kb on + strand, within ABID97_RS20410at 4214.055 kb on - strand, within ABID97_RS20410at 4214.055 kb on - strand, within ABID97_RS20410at 4214.056 kb on + strand, within ABID97_RS20410at 4214.057 kb on - strand, within ABID97_RS20410at 4214.200 kb on - strand, within ABID97_RS20410at 4214.307 kb on + strand, within ABID97_RS20410at 4214.308 kb on - strand, within ABID97_RS20410at 4214.454 kb on - strand, within ABID97_RS20410at 4214.454 kb on - strand, within ABID97_RS20410at 4214.598 kb on - strand, within ABID97_RS20410at 4214.663 kb on + strand, within ABID97_RS20410

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,212,207 - ABID97_RS20400 0.35 +0.3
4,212,207 - ABID97_RS20400 0.35 +0.2
4,212,207 - ABID97_RS20400 0.35 +0.5
4,212,207 - ABID97_RS20400 0.35 +1.2
4,212,603 - ABID97_RS20400 0.62 +3.8
4,212,786 - ABID97_RS20400 0.74 +0.0
4,212,791 + ABID97_RS20400 0.74 -0.2
4,212,791 + ABID97_RS20400 0.74 +1.7
4,212,791 + ABID97_RS20400 0.74 +0.6
4,212,791 + ABID97_RS20400 0.74 +2.6
4,212,791 + ABID97_RS20400 0.74 +1.2
4,212,791 + ABID97_RS20400 0.74 +1.6
4,212,791 + ABID97_RS20400 0.74 +1.6
4,212,792 - ABID97_RS20400 0.74 -1.4
4,212,792 - ABID97_RS20400 0.74 +0.5
4,212,792 - ABID97_RS20400 0.74 +0.8
4,212,792 - ABID97_RS20400 0.74 -0.8
4,212,792 - ABID97_RS20400 0.74 -0.1
4,213,494 + ABID97_RS20405 0.62 +2.1
4,213,495 - ABID97_RS20405 0.62 -0.8
4,213,591 - ABID97_RS20405 0.80 +1.2
4,213,614 + ABID97_RS20405 0.84 +1.6
4,213,615 - ABID97_RS20405 0.85 -0.2
4,213,615 - ABID97_RS20405 0.85 -0.8
4,213,629 + ABID97_RS20405 0.87 +0.1
4,214,054 + ABID97_RS20410 0.16 +1.4
4,214,054 + ABID97_RS20410 0.16 -1.6
4,214,054 + ABID97_RS20410 0.16 +1.6
4,214,055 - ABID97_RS20410 0.16 -0.3
4,214,055 - ABID97_RS20410 0.16 +1.2
4,214,056 + ABID97_RS20410 0.16 -0.6
4,214,057 - ABID97_RS20410 0.16 -0.3
4,214,200 - ABID97_RS20410 0.24 -0.1
4,214,307 + ABID97_RS20410 0.30 -0.9
4,214,308 - ABID97_RS20410 0.30 -1.4
4,214,454 - ABID97_RS20410 0.38 -2.2
4,214,454 - ABID97_RS20410 0.38 +0.5
4,214,598 - ABID97_RS20410 0.46 -1.0
4,214,663 + ABID97_RS20410 0.50 +0.4

Or see this region's nucleotide sequence