Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19625 and ABID97_RS19630 are separated by 82 nucleotides ABID97_RS19630 and ABID97_RS19635 overlap by 4 nucleotides ABID97_RS19635 and ABID97_RS19640 are separated by 141 nucleotides
ABID97_RS19625: ABID97_RS19625 - TRAP transporter substrate-binding protein, at 4,053,554 to 4,054,525
_RS19625
ABID97_RS19630: ABID97_RS19630 - TRAP transporter small permease, at 4,054,608 to 4,055,102
_RS19630
ABID97_RS19635: ABID97_RS19635 - TRAP transporter large permease, at 4,055,099 to 4,056,376
_RS19635
ABID97_RS19640: ABID97_RS19640 - hypothetical protein, at 4,056,518 to 4,057,054
_RS19640
Position (kb)
4055
4056
4057 Strain fitness (log2 ratio)
-1
0
1 at 4055.008 kb on - strand, within ABID97_RS19630 at 4055.057 kb on + strand at 4055.058 kb on - strand at 4055.235 kb on + strand, within ABID97_RS19635 at 4055.784 kb on - strand, within ABID97_RS19635 at 4055.832 kb on - strand, within ABID97_RS19635 at 4055.885 kb on + strand, within ABID97_RS19635 at 4055.886 kb on - strand, within ABID97_RS19635 at 4056.276 kb on - strand at 4056.326 kb on + strand at 4056.326 kb on + strand at 4056.326 kb on + strand at 4056.327 kb on - strand at 4056.327 kb on - strand at 4057.099 kb on + strand at 4057.100 kb on - strand at 4057.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,055,008 - ABID97_RS19630 0.81 +0.7 4,055,057 + +0.7 4,055,058 - -0.3 4,055,235 + ABID97_RS19635 0.11 +0.1 4,055,784 - ABID97_RS19635 0.54 -1.1 4,055,832 - ABID97_RS19635 0.57 -1.3 4,055,885 + ABID97_RS19635 0.62 -0.4 4,055,886 - ABID97_RS19635 0.62 -1.7 4,056,276 - -0.2 4,056,326 + -0.8 4,056,326 + +0.4 4,056,326 + -1.6 4,056,327 - +0.3 4,056,327 - +0.1 4,057,099 + -0.3 4,057,100 - -0.4 4,057,300 + -0.3
Or see this region's nucleotide sequence