Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19635

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19625 and ABID97_RS19630 are separated by 82 nucleotidesABID97_RS19630 and ABID97_RS19635 overlap by 4 nucleotidesABID97_RS19635 and ABID97_RS19640 are separated by 141 nucleotides ABID97_RS19625: ABID97_RS19625 - TRAP transporter substrate-binding protein, at 4,053,554 to 4,054,525 _RS19625 ABID97_RS19630: ABID97_RS19630 - TRAP transporter small permease, at 4,054,608 to 4,055,102 _RS19630 ABID97_RS19635: ABID97_RS19635 - TRAP transporter large permease, at 4,055,099 to 4,056,376 _RS19635 ABID97_RS19640: ABID97_RS19640 - hypothetical protein, at 4,056,518 to 4,057,054 _RS19640 Position (kb) 4055 4056 4057Strain fitness (log2 ratio) -1 0 1at 4055.008 kb on - strand, within ABID97_RS19630at 4055.057 kb on + strandat 4055.058 kb on - strandat 4055.235 kb on + strand, within ABID97_RS19635at 4055.784 kb on - strand, within ABID97_RS19635at 4055.832 kb on - strand, within ABID97_RS19635at 4055.885 kb on + strand, within ABID97_RS19635at 4055.886 kb on - strand, within ABID97_RS19635at 4056.276 kb on - strandat 4056.326 kb on + strandat 4056.326 kb on + strandat 4056.326 kb on + strandat 4056.327 kb on - strandat 4056.327 kb on - strandat 4057.099 kb on + strandat 4057.100 kb on - strandat 4057.300 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,055,008 - ABID97_RS19630 0.81 +0.7
4,055,057 + +0.7
4,055,058 - -0.3
4,055,235 + ABID97_RS19635 0.11 +0.1
4,055,784 - ABID97_RS19635 0.54 -1.1
4,055,832 - ABID97_RS19635 0.57 -1.3
4,055,885 + ABID97_RS19635 0.62 -0.4
4,055,886 - ABID97_RS19635 0.62 -1.7
4,056,276 - -0.2
4,056,326 + -0.8
4,056,326 + +0.4
4,056,326 + -1.6
4,056,327 - +0.3
4,056,327 - +0.1
4,057,099 + -0.3
4,057,100 - -0.4
4,057,300 + -0.3

Or see this region's nucleotide sequence