Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19280

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19275 and ABID97_RS19280 are separated by 88 nucleotidesABID97_RS19280 and ABID97_RS19285 are separated by 80 nucleotidesABID97_RS19285 and ABID97_RS19290 are separated by 95 nucleotides ABID97_RS19275: ABID97_RS19275 - GTPase/DUF3482 domain-containing protein, at 3,979,909 to 3,981,321 _RS19275 ABID97_RS19280: ABID97_RS19280 - hemolysin III family protein, at 3,981,410 to 3,982,030 _RS19280 ABID97_RS19285: ABID97_RS19285 - helix-turn-helix transcriptional regulator, at 3,982,111 to 3,982,551 _RS19285 ABID97_RS19290: ABID97_RS19290 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 3,982,647 to 3,983,948 _RS19290 Position (kb) 3981 3982 3983Strain fitness (log2 ratio) -1 0 1 2 3at 3980.482 kb on + strand, within ABID97_RS19275at 3980.482 kb on + strand, within ABID97_RS19275at 3980.482 kb on + strand, within ABID97_RS19275at 3980.482 kb on + strand, within ABID97_RS19275at 3980.537 kb on + strand, within ABID97_RS19275at 3980.537 kb on + strand, within ABID97_RS19275at 3980.538 kb on - strand, within ABID97_RS19275at 3980.538 kb on - strand, within ABID97_RS19275at 3981.362 kb on - strandat 3981.362 kb on - strandat 3981.362 kb on - strandat 3981.362 kb on - strandat 3981.362 kb on - strandat 3981.362 kb on - strandat 3981.413 kb on + strandat 3981.414 kb on - strandat 3981.437 kb on + strandat 3981.437 kb on + strandat 3981.437 kb on + strandat 3981.438 kb on - strandat 3981.566 kb on + strand, within ABID97_RS19280at 3981.644 kb on + strand, within ABID97_RS19280at 3981.665 kb on + strand, within ABID97_RS19280at 3981.665 kb on + strand, within ABID97_RS19280at 3981.665 kb on + strand, within ABID97_RS19280at 3981.665 kb on + strand, within ABID97_RS19280at 3981.666 kb on - strand, within ABID97_RS19280at 3981.666 kb on - strand, within ABID97_RS19280at 3981.666 kb on - strand, within ABID97_RS19280at 3981.807 kb on - strand, within ABID97_RS19280at 3981.906 kb on - strand, within ABID97_RS19280at 3981.907 kb on + strand, within ABID97_RS19280at 3981.926 kb on + strand, within ABID97_RS19280at 3981.927 kb on - strand, within ABID97_RS19280at 3981.927 kb on - strand, within ABID97_RS19280at 3981.927 kb on - strand, within ABID97_RS19280at 3982.054 kb on + strandat 3982.261 kb on + strand, within ABID97_RS19285at 3982.441 kb on + strand, within ABID97_RS19285at 3982.441 kb on + strand, within ABID97_RS19285at 3982.441 kb on + strand, within ABID97_RS19285at 3982.442 kb on - strand, within ABID97_RS19285at 3982.442 kb on - strand, within ABID97_RS19285at 3982.442 kb on - strand, within ABID97_RS19285at 3982.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,980,482 + ABID97_RS19275 0.41 +0.5
3,980,482 + ABID97_RS19275 0.41 +0.0
3,980,482 + ABID97_RS19275 0.41 -0.4
3,980,482 + ABID97_RS19275 0.41 -1.4
3,980,537 + ABID97_RS19275 0.44 -0.2
3,980,537 + ABID97_RS19275 0.44 +0.7
3,980,538 - ABID97_RS19275 0.45 -0.1
3,980,538 - ABID97_RS19275 0.45 -0.1
3,981,362 - +0.2
3,981,362 - -0.0
3,981,362 - +0.2
3,981,362 - +0.8
3,981,362 - -0.2
3,981,362 - -0.0
3,981,413 + +0.1
3,981,414 - +0.5
3,981,437 + -0.5
3,981,437 + -1.2
3,981,437 + +0.0
3,981,438 - +0.9
3,981,566 + ABID97_RS19280 0.25 -0.4
3,981,644 + ABID97_RS19280 0.38 -0.3
3,981,665 + ABID97_RS19280 0.41 -0.5
3,981,665 + ABID97_RS19280 0.41 +0.7
3,981,665 + ABID97_RS19280 0.41 +1.1
3,981,665 + ABID97_RS19280 0.41 +0.1
3,981,666 - ABID97_RS19280 0.41 -0.4
3,981,666 - ABID97_RS19280 0.41 -0.9
3,981,666 - ABID97_RS19280 0.41 +1.6
3,981,807 - ABID97_RS19280 0.64 +0.2
3,981,906 - ABID97_RS19280 0.80 +0.1
3,981,907 + ABID97_RS19280 0.80 +0.3
3,981,926 + ABID97_RS19280 0.83 -0.0
3,981,927 - ABID97_RS19280 0.83 +3.6
3,981,927 - ABID97_RS19280 0.83 +0.3
3,981,927 - ABID97_RS19280 0.83 -0.3
3,982,054 + +0.0
3,982,261 + ABID97_RS19285 0.34 -0.4
3,982,441 + ABID97_RS19285 0.75 +0.4
3,982,441 + ABID97_RS19285 0.75 +1.3
3,982,441 + ABID97_RS19285 0.75 +0.9
3,982,442 - ABID97_RS19285 0.75 +0.2
3,982,442 - ABID97_RS19285 0.75 +2.1
3,982,442 - ABID97_RS19285 0.75 -1.0
3,982,645 - +0.2

Or see this region's nucleotide sequence