Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19050

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19040 and ABID97_RS19045 are separated by 31 nucleotidesABID97_RS19045 and ABID97_RS19050 are separated by 37 nucleotidesABID97_RS19050 and ABID97_RS19055 are separated by 30 nucleotidesABID97_RS19055 and ABID97_RS19060 overlap by 116 nucleotides ABID97_RS19040: ABID97_RS19040 - isocitrate/isopropylmalate dehydrogenase family protein, at 3,918,947 to 3,920,020 _RS19040 ABID97_RS19045: ABID97_RS19045 - cupin domain-containing protein, at 3,920,052 to 3,920,468 _RS19045 ABID97_RS19050: ABID97_RS19050 - NAD-dependent succinate-semialdehyde dehydrogenase, at 3,920,506 to 3,921,876 _RS19050 ABID97_RS19055: ABID97_RS19055 - amidohydrolase family protein, at 3,921,907 to 3,922,479 _RS19055 ABID97_RS19060: ABID97_RS19060 - amidohydrolase family protein, at 3,922,364 to 3,922,822 _RS19060 Position (kb) 3920 3921 3922Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3920.200 kb on + strand, within ABID97_RS19045at 3920.200 kb on + strand, within ABID97_RS19045at 3920.201 kb on - strand, within ABID97_RS19045at 3920.336 kb on - strand, within ABID97_RS19045at 3920.485 kb on + strandat 3920.486 kb on - strandat 3920.832 kb on + strand, within ABID97_RS19050at 3920.896 kb on + strand, within ABID97_RS19050at 3920.897 kb on - strand, within ABID97_RS19050at 3921.389 kb on - strand, within ABID97_RS19050at 3921.796 kb on + strandat 3921.796 kb on + strandat 3921.909 kb on - strandat 3922.215 kb on + strand, within ABID97_RS19055at 3922.215 kb on + strand, within ABID97_RS19055at 3922.215 kb on + strand, within ABID97_RS19055at 3922.217 kb on + strand, within ABID97_RS19055at 3922.217 kb on + strand, within ABID97_RS19055at 3922.406 kb on - strandat 3922.624 kb on - strand, within ABID97_RS19060at 3922.624 kb on - strand, within ABID97_RS19060at 3922.624 kb on - strand, within ABID97_RS19060at 3922.711 kb on + strand, within ABID97_RS19060at 3922.711 kb on + strand, within ABID97_RS19060at 3922.711 kb on + strand, within ABID97_RS19060at 3922.712 kb on - strand, within ABID97_RS19060at 3922.714 kb on - strand, within ABID97_RS19060at 3922.755 kb on - strand, within ABID97_RS19060

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,920,200 + ABID97_RS19045 0.35 +0.4
3,920,200 + ABID97_RS19045 0.35 -0.2
3,920,201 - ABID97_RS19045 0.36 -1.0
3,920,336 - ABID97_RS19045 0.68 -0.5
3,920,485 + -0.8
3,920,486 - -2.8
3,920,832 + ABID97_RS19050 0.24 -1.3
3,920,896 + ABID97_RS19050 0.28 -2.1
3,920,897 - ABID97_RS19050 0.29 -0.4
3,921,389 - ABID97_RS19050 0.64 +0.4
3,921,796 + +0.8
3,921,796 + -0.3
3,921,909 - -0.0
3,922,215 + ABID97_RS19055 0.54 +0.0
3,922,215 + ABID97_RS19055 0.54 +0.1
3,922,215 + ABID97_RS19055 0.54 -0.9
3,922,217 + ABID97_RS19055 0.54 -0.5
3,922,217 + ABID97_RS19055 0.54 -0.3
3,922,406 - -0.7
3,922,624 - ABID97_RS19060 0.57 +0.2
3,922,624 - ABID97_RS19060 0.57 -0.3
3,922,624 - ABID97_RS19060 0.57 +0.0
3,922,711 + ABID97_RS19060 0.76 +0.1
3,922,711 + ABID97_RS19060 0.76 -0.0
3,922,711 + ABID97_RS19060 0.76 -1.2
3,922,712 - ABID97_RS19060 0.76 +1.1
3,922,714 - ABID97_RS19060 0.76 -2.2
3,922,755 - ABID97_RS19060 0.85 +3.1

Or see this region's nucleotide sequence