Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19040 and ABID97_RS19045 are separated by 31 nucleotides ABID97_RS19045 and ABID97_RS19050 are separated by 37 nucleotides ABID97_RS19050 and ABID97_RS19055 are separated by 30 nucleotides ABID97_RS19055 and ABID97_RS19060 overlap by 116 nucleotides
ABID97_RS19040: ABID97_RS19040 - isocitrate/isopropylmalate dehydrogenase family protein, at 3,918,947 to 3,920,020
_RS19040
ABID97_RS19045: ABID97_RS19045 - cupin domain-containing protein, at 3,920,052 to 3,920,468
_RS19045
ABID97_RS19050: ABID97_RS19050 - NAD-dependent succinate-semialdehyde dehydrogenase, at 3,920,506 to 3,921,876
_RS19050
ABID97_RS19055: ABID97_RS19055 - amidohydrolase family protein, at 3,921,907 to 3,922,479
_RS19055
ABID97_RS19060: ABID97_RS19060 - amidohydrolase family protein, at 3,922,364 to 3,922,822
_RS19060
Position (kb)
3920
3921
3922 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3920.200 kb on + strand, within ABID97_RS19045 at 3920.200 kb on + strand, within ABID97_RS19045 at 3920.201 kb on - strand, within ABID97_RS19045 at 3920.336 kb on - strand, within ABID97_RS19045 at 3920.485 kb on + strand at 3920.486 kb on - strand at 3920.832 kb on + strand, within ABID97_RS19050 at 3920.896 kb on + strand, within ABID97_RS19050 at 3920.897 kb on - strand, within ABID97_RS19050 at 3921.389 kb on - strand, within ABID97_RS19050 at 3921.796 kb on + strand at 3921.796 kb on + strand at 3921.909 kb on - strand at 3922.215 kb on + strand, within ABID97_RS19055 at 3922.215 kb on + strand, within ABID97_RS19055 at 3922.215 kb on + strand, within ABID97_RS19055 at 3922.217 kb on + strand, within ABID97_RS19055 at 3922.217 kb on + strand, within ABID97_RS19055 at 3922.406 kb on - strand at 3922.624 kb on - strand, within ABID97_RS19060 at 3922.624 kb on - strand, within ABID97_RS19060 at 3922.624 kb on - strand, within ABID97_RS19060 at 3922.711 kb on + strand, within ABID97_RS19060 at 3922.711 kb on + strand, within ABID97_RS19060 at 3922.711 kb on + strand, within ABID97_RS19060 at 3922.712 kb on - strand, within ABID97_RS19060 at 3922.714 kb on - strand, within ABID97_RS19060 at 3922.755 kb on - strand, within ABID97_RS19060
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,920,200 + ABID97_RS19045 0.35 +0.4 3,920,200 + ABID97_RS19045 0.35 -0.2 3,920,201 - ABID97_RS19045 0.36 -1.0 3,920,336 - ABID97_RS19045 0.68 -0.5 3,920,485 + -0.8 3,920,486 - -2.8 3,920,832 + ABID97_RS19050 0.24 -1.3 3,920,896 + ABID97_RS19050 0.28 -2.1 3,920,897 - ABID97_RS19050 0.29 -0.4 3,921,389 - ABID97_RS19050 0.64 +0.4 3,921,796 + +0.8 3,921,796 + -0.3 3,921,909 - -0.0 3,922,215 + ABID97_RS19055 0.54 +0.0 3,922,215 + ABID97_RS19055 0.54 +0.1 3,922,215 + ABID97_RS19055 0.54 -0.9 3,922,217 + ABID97_RS19055 0.54 -0.5 3,922,217 + ABID97_RS19055 0.54 -0.3 3,922,406 - -0.7 3,922,624 - ABID97_RS19060 0.57 +0.2 3,922,624 - ABID97_RS19060 0.57 -0.3 3,922,624 - ABID97_RS19060 0.57 +0.0 3,922,711 + ABID97_RS19060 0.76 +0.1 3,922,711 + ABID97_RS19060 0.76 -0.0 3,922,711 + ABID97_RS19060 0.76 -1.2 3,922,712 - ABID97_RS19060 0.76 +1.1 3,922,714 - ABID97_RS19060 0.76 -2.2 3,922,755 - ABID97_RS19060 0.85 +3.1
Or see this region's nucleotide sequence