Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16010

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16000 and ABID97_RS16005 overlap by 4 nucleotidesABID97_RS16005 and ABID97_RS16010 are separated by 183 nucleotidesABID97_RS16010 and ABID97_RS16015 are separated by 166 nucleotidesABID97_RS16015 and ABID97_RS16020 are separated by 256 nucleotides ABID97_RS16000: ABID97_RS16000 - TatD family hydrolase, at 3,314,000 to 3,314,809 _RS16000 ABID97_RS16005: ABID97_RS16005 - ankyrin repeat domain-containing protein, at 3,314,806 to 3,315,483 _RS16005 ABID97_RS16010: ABID97_RS16010 - ISNCY family transposase, at 3,315,667 to 3,317,082 _RS16010 ABID97_RS16015: ABID97_RS16015 - secondary thiamine-phosphate synthase enzyme YjbQ, at 3,317,249 to 3,317,671 _RS16015 ABID97_RS16020: ABID97_RS16020 - nitrite reductase large subunit NirB, at 3,317,928 to 3,320,396 _RS16020 Position (kb) 3315 3316 3317 3318Strain fitness (log2 ratio) -1 0 1 2 3 4at 3314.693 kb on + strand, within ABID97_RS16000at 3314.924 kb on + strand, within ABID97_RS16005at 3315.030 kb on - strand, within ABID97_RS16005at 3315.030 kb on - strand, within ABID97_RS16005at 3315.030 kb on - strand, within ABID97_RS16005at 3315.184 kb on + strand, within ABID97_RS16005at 3315.185 kb on - strand, within ABID97_RS16005at 3315.295 kb on + strand, within ABID97_RS16005at 3315.295 kb on + strand, within ABID97_RS16005at 3315.295 kb on + strand, within ABID97_RS16005at 3315.295 kb on + strand, within ABID97_RS16005at 3315.295 kb on + strand, within ABID97_RS16005at 3315.296 kb on - strand, within ABID97_RS16005at 3315.296 kb on - strand, within ABID97_RS16005at 3315.296 kb on - strand, within ABID97_RS16005at 3317.147 kb on + strandat 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.607 kb on - strand, within ABID97_RS16015at 3317.607 kb on - strand, within ABID97_RS16015at 3317.607 kb on - strand, within ABID97_RS16015at 3317.669 kb on + strandat 3317.669 kb on + strandat 3317.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,314,693 + ABID97_RS16000 0.86 -0.5
3,314,924 + ABID97_RS16005 0.17 -0.5
3,315,030 - ABID97_RS16005 0.33 -0.6
3,315,030 - ABID97_RS16005 0.33 -0.5
3,315,030 - ABID97_RS16005 0.33 +0.2
3,315,184 + ABID97_RS16005 0.56 +0.1
3,315,185 - ABID97_RS16005 0.56 -1.1
3,315,295 + ABID97_RS16005 0.72 -0.0
3,315,295 + ABID97_RS16005 0.72 -0.6
3,315,295 + ABID97_RS16005 0.72 +0.7
3,315,295 + ABID97_RS16005 0.72 -0.0
3,315,295 + ABID97_RS16005 0.72 +4.0
3,315,296 - ABID97_RS16005 0.72 -0.6
3,315,296 - ABID97_RS16005 0.72 +0.1
3,315,296 - ABID97_RS16005 0.72 -0.1
3,317,147 + -0.1
3,317,606 + ABID97_RS16015 0.84 +1.4
3,317,606 + ABID97_RS16015 0.84 +2.1
3,317,606 + ABID97_RS16015 0.84 +0.3
3,317,606 + ABID97_RS16015 0.84 -0.7
3,317,606 + ABID97_RS16015 0.84 +0.7
3,317,606 + ABID97_RS16015 0.84 -0.6
3,317,607 - ABID97_RS16015 0.85 -0.8
3,317,607 - ABID97_RS16015 0.85 -0.2
3,317,607 - ABID97_RS16015 0.85 -0.9
3,317,669 + -0.6
3,317,669 + -0.0
3,317,670 - -0.6

Or see this region's nucleotide sequence