Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13955 and ABID97_RS13960 overlap by 4 nucleotides ABID97_RS13960 and ABID97_RS13965 overlap by 11 nucleotides ABID97_RS13965 and ABID97_RS13970 are separated by 114 nucleotides
ABID97_RS13955: ABID97_RS13955 - biotin synthase BioB, at 2,899,876 to 2,900,901
_RS13955
ABID97_RS13960: ABID97_RS13960 - VOC family protein, at 2,900,898 to 2,901,386
_RS13960
ABID97_RS13965: ABID97_RS13965 - Lrp/AsnC family transcriptional regulator, at 2,901,376 to 2,901,873
_RS13965
ABID97_RS13970: ABID97_RS13970 - drug/metabolite exporter YedA, at 2,901,988 to 2,902,905
_RS13970
Position (kb)
2900
2901
2902 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9
10 at 2900.104 kb on + strand, within ABID97_RS13955 at 2900.104 kb on + strand, within ABID97_RS13955 at 2900.105 kb on - strand, within ABID97_RS13955 at 2900.374 kb on + strand, within ABID97_RS13955 at 2900.377 kb on + strand, within ABID97_RS13955 at 2900.377 kb on + strand, within ABID97_RS13955 at 2900.378 kb on - strand, within ABID97_RS13955 at 2900.378 kb on - strand, within ABID97_RS13955 at 2900.408 kb on - strand, within ABID97_RS13955 at 2900.410 kb on + strand, within ABID97_RS13955 at 2900.410 kb on + strand, within ABID97_RS13955 at 2900.610 kb on - strand, within ABID97_RS13955 at 2901.578 kb on + strand, within ABID97_RS13965 at 2901.579 kb on - strand, within ABID97_RS13965 at 2901.866 kb on + strand at 2901.948 kb on + strand at 2901.949 kb on - strand at 2902.100 kb on - strand, within ABID97_RS13970 at 2902.100 kb on - strand, within ABID97_RS13970 at 2902.114 kb on + strand, within ABID97_RS13970 at 2902.115 kb on - strand, within ABID97_RS13970 at 2902.115 kb on - strand, within ABID97_RS13970 at 2902.115 kb on - strand, within ABID97_RS13970 at 2902.115 kb on - strand, within ABID97_RS13970
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,900,104 + ABID97_RS13955 0.22 +1.5 2,900,104 + ABID97_RS13955 0.22 -0.2 2,900,105 - ABID97_RS13955 0.22 +2.5 2,900,374 + ABID97_RS13955 0.49 +0.7 2,900,377 + ABID97_RS13955 0.49 +2.5 2,900,377 + ABID97_RS13955 0.49 -0.1 2,900,378 - ABID97_RS13955 0.49 +10.1 2,900,378 - ABID97_RS13955 0.49 +10.3 2,900,408 - ABID97_RS13955 0.52 +4.8 2,900,410 + ABID97_RS13955 0.52 +7.1 2,900,410 + ABID97_RS13955 0.52 +4.8 2,900,610 - ABID97_RS13955 0.72 +0.4 2,901,578 + ABID97_RS13965 0.41 +0.6 2,901,579 - ABID97_RS13965 0.41 -0.6 2,901,866 + -0.2 2,901,948 + -0.4 2,901,949 - +0.1 2,902,100 - ABID97_RS13970 0.12 +0.3 2,902,100 - ABID97_RS13970 0.12 +1.9 2,902,114 + ABID97_RS13970 0.14 -0.2 2,902,115 - ABID97_RS13970 0.14 -0.4 2,902,115 - ABID97_RS13970 0.14 -0.2 2,902,115 - ABID97_RS13970 0.14 +0.9 2,902,115 - ABID97_RS13970 0.14 +1.0
Or see this region's nucleotide sequence