Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13960

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13955 and ABID97_RS13960 overlap by 4 nucleotidesABID97_RS13960 and ABID97_RS13965 overlap by 11 nucleotidesABID97_RS13965 and ABID97_RS13970 are separated by 114 nucleotides ABID97_RS13955: ABID97_RS13955 - biotin synthase BioB, at 2,899,876 to 2,900,901 _RS13955 ABID97_RS13960: ABID97_RS13960 - VOC family protein, at 2,900,898 to 2,901,386 _RS13960 ABID97_RS13965: ABID97_RS13965 - Lrp/AsnC family transcriptional regulator, at 2,901,376 to 2,901,873 _RS13965 ABID97_RS13970: ABID97_RS13970 - drug/metabolite exporter YedA, at 2,901,988 to 2,902,905 _RS13970 Position (kb) 2900 2901 2902Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10at 2900.104 kb on + strand, within ABID97_RS13955at 2900.104 kb on + strand, within ABID97_RS13955at 2900.105 kb on - strand, within ABID97_RS13955at 2900.374 kb on + strand, within ABID97_RS13955at 2900.377 kb on + strand, within ABID97_RS13955at 2900.377 kb on + strand, within ABID97_RS13955at 2900.378 kb on - strand, within ABID97_RS13955at 2900.378 kb on - strand, within ABID97_RS13955at 2900.408 kb on - strand, within ABID97_RS13955at 2900.410 kb on + strand, within ABID97_RS13955at 2900.410 kb on + strand, within ABID97_RS13955at 2900.610 kb on - strand, within ABID97_RS13955at 2901.578 kb on + strand, within ABID97_RS13965at 2901.579 kb on - strand, within ABID97_RS13965at 2901.866 kb on + strandat 2901.948 kb on + strandat 2901.949 kb on - strandat 2902.100 kb on - strand, within ABID97_RS13970at 2902.100 kb on - strand, within ABID97_RS13970at 2902.114 kb on + strand, within ABID97_RS13970at 2902.115 kb on - strand, within ABID97_RS13970at 2902.115 kb on - strand, within ABID97_RS13970at 2902.115 kb on - strand, within ABID97_RS13970at 2902.115 kb on - strand, within ABID97_RS13970

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,900,104 + ABID97_RS13955 0.22 +1.5
2,900,104 + ABID97_RS13955 0.22 -0.2
2,900,105 - ABID97_RS13955 0.22 +2.5
2,900,374 + ABID97_RS13955 0.49 +0.7
2,900,377 + ABID97_RS13955 0.49 +2.5
2,900,377 + ABID97_RS13955 0.49 -0.1
2,900,378 - ABID97_RS13955 0.49 +10.1
2,900,378 - ABID97_RS13955 0.49 +10.3
2,900,408 - ABID97_RS13955 0.52 +4.8
2,900,410 + ABID97_RS13955 0.52 +7.1
2,900,410 + ABID97_RS13955 0.52 +4.8
2,900,610 - ABID97_RS13955 0.72 +0.4
2,901,578 + ABID97_RS13965 0.41 +0.6
2,901,579 - ABID97_RS13965 0.41 -0.6
2,901,866 + -0.2
2,901,948 + -0.4
2,901,949 - +0.1
2,902,100 - ABID97_RS13970 0.12 +0.3
2,902,100 - ABID97_RS13970 0.12 +1.9
2,902,114 + ABID97_RS13970 0.14 -0.2
2,902,115 - ABID97_RS13970 0.14 -0.4
2,902,115 - ABID97_RS13970 0.14 -0.2
2,902,115 - ABID97_RS13970 0.14 +0.9
2,902,115 - ABID97_RS13970 0.14 +1.0

Or see this region's nucleotide sequence