Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13945

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13940 and ABID97_RS13945 are separated by 40 nucleotidesABID97_RS13945 and ABID97_RS13950 are separated by 21 nucleotides ABID97_RS13940: ABID97_RS13940 - methylmalonyl Co-A mutase-associated GTPase MeaB, at 2,895,172 to 2,896,221 _RS13940 ABID97_RS13945: ABID97_RS13945 - acyl-CoA carboxylase subunit beta, at 2,896,262 to 2,897,806 _RS13945 ABID97_RS13950: ABID97_RS13950 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,897,828 to 2,899,876 _RS13950 Position (kb) 2896 2897 2898Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 2895.529 kb on + strand, within ABID97_RS13940at 2895.530 kb on - strand, within ABID97_RS13940at 2895.530 kb on - strand, within ABID97_RS13940at 2896.526 kb on + strand, within ABID97_RS13945at 2896.688 kb on + strand, within ABID97_RS13945at 2896.779 kb on - strand, within ABID97_RS13945at 2896.779 kb on - strand, within ABID97_RS13945at 2896.779 kb on - strand, within ABID97_RS13945at 2896.826 kb on + strand, within ABID97_RS13945at 2896.826 kb on + strand, within ABID97_RS13945at 2896.826 kb on + strand, within ABID97_RS13945at 2896.827 kb on - strand, within ABID97_RS13945at 2896.985 kb on + strand, within ABID97_RS13945at 2896.986 kb on - strand, within ABID97_RS13945at 2896.992 kb on - strand, within ABID97_RS13945at 2897.115 kb on - strand, within ABID97_RS13945at 2897.478 kb on - strand, within ABID97_RS13945at 2897.667 kb on - strandat 2897.921 kb on + strandat 2897.921 kb on + strandat 2898.006 kb on - strandat 2898.494 kb on + strand, within ABID97_RS13950at 2898.495 kb on - strand, within ABID97_RS13950at 2898.650 kb on + strand, within ABID97_RS13950at 2898.680 kb on + strand, within ABID97_RS13950at 2898.681 kb on - strand, within ABID97_RS13950

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,895,529 + ABID97_RS13940 0.34 +6.4
2,895,530 - ABID97_RS13940 0.34 +3.9
2,895,530 - ABID97_RS13940 0.34 +4.7
2,896,526 + ABID97_RS13945 0.17 +0.5
2,896,688 + ABID97_RS13945 0.28 -3.4
2,896,779 - ABID97_RS13945 0.33 -3.5
2,896,779 - ABID97_RS13945 0.33 -2.3
2,896,779 - ABID97_RS13945 0.33 -0.3
2,896,826 + ABID97_RS13945 0.37 -2.6
2,896,826 + ABID97_RS13945 0.37 -2.4
2,896,826 + ABID97_RS13945 0.37 -2.2
2,896,827 - ABID97_RS13945 0.37 -4.6
2,896,985 + ABID97_RS13945 0.47 -1.7
2,896,986 - ABID97_RS13945 0.47 -2.5
2,896,992 - ABID97_RS13945 0.47 -2.7
2,897,115 - ABID97_RS13945 0.55 -3.7
2,897,478 - ABID97_RS13945 0.79 -2.3
2,897,667 - -0.1
2,897,921 + -1.9
2,897,921 + +1.5
2,898,006 - -1.9
2,898,494 + ABID97_RS13950 0.33 -1.9
2,898,495 - ABID97_RS13950 0.33 -3.1
2,898,650 + ABID97_RS13950 0.40 -2.3
2,898,680 + ABID97_RS13950 0.42 -1.2
2,898,681 - ABID97_RS13950 0.42 -0.6

Or see this region's nucleotide sequence