Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13335

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS13325 and ABID97_RS13330 are separated by 17 nucleotidesABID97_RS13330 and ABID97_RS13335 are separated by 84 nucleotidesABID97_RS13335 and ABID97_RS13340 are separated by 28 nucleotides ABID97_RS13325: ABID97_RS13325 - antibiotic biosynthesis monooxygenase, at 2,775,068 to 2,775,385 _RS13325 ABID97_RS13330: ABID97_RS13330 - FMN-binding negative transcriptional regulator, at 2,775,403 to 2,776,035 _RS13330 ABID97_RS13335: ABID97_RS13335 - PLP-dependent aminotransferase family protein, at 2,776,120 to 2,777,598 _RS13335 ABID97_RS13340: ABID97_RS13340 - molybdopterin-dependent oxidoreductase, at 2,777,627 to 2,778,679 _RS13340 Position (kb) 2776 2777 2778Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2775.231 kb on + strand, within ABID97_RS13325at 2775.381 kb on + strandat 2775.382 kb on - strandat 2775.382 kb on - strandat 2775.585 kb on - strand, within ABID97_RS13330at 2775.785 kb on + strand, within ABID97_RS13330at 2776.031 kb on + strandat 2776.069 kb on - strandat 2776.300 kb on + strand, within ABID97_RS13335at 2776.562 kb on - strand, within ABID97_RS13335at 2776.600 kb on + strand, within ABID97_RS13335at 2776.649 kb on - strand, within ABID97_RS13335at 2776.900 kb on + strand, within ABID97_RS13335at 2776.901 kb on - strand, within ABID97_RS13335at 2776.901 kb on - strand, within ABID97_RS13335at 2778.013 kb on - strand, within ABID97_RS13340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
2,775,231 + ABID97_RS13325 0.51 +0.9
2,775,381 + -0.1
2,775,382 - -0.1
2,775,382 - -2.8
2,775,585 - ABID97_RS13330 0.29 +0.6
2,775,785 + ABID97_RS13330 0.60 -0.4
2,776,031 + +0.1
2,776,069 - -0.4
2,776,300 + ABID97_RS13335 0.12 +0.1
2,776,562 - ABID97_RS13335 0.30 +1.5
2,776,600 + ABID97_RS13335 0.32 -0.4
2,776,649 - ABID97_RS13335 0.36 -2.0
2,776,900 + ABID97_RS13335 0.53 +0.6
2,776,901 - ABID97_RS13335 0.53 +2.1
2,776,901 - ABID97_RS13335 0.53 -0.4
2,778,013 - ABID97_RS13340 0.37 +0.5

Or see this region's nucleotide sequence