Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12530

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12525 and ABID97_RS12530 are separated by 43 nucleotidesABID97_RS12530 and ABID97_RS12535 are separated by 2 nucleotides ABID97_RS12525: ABID97_RS12525 - type I secretion system permease/ATPase, at 2,598,399 to 2,600,123 _RS12525 ABID97_RS12530: ABID97_RS12530 - HlyD family type I secretion periplasmic adaptor subunit, at 2,600,167 to 2,601,540 _RS12530 ABID97_RS12535: ABID97_RS12535 - TolC family outer membrane protein, at 2,601,543 to 2,602,874 _RS12535 Position (kb) 2600 2601 2602Strain fitness (log2 ratio) -1 0 1at 2599.848 kb on + strand, within ABID97_RS12525at 2599.848 kb on + strand, within ABID97_RS12525at 2599.848 kb on + strand, within ABID97_RS12525at 2600.184 kb on - strandat 2600.184 kb on - strandat 2600.555 kb on + strand, within ABID97_RS12530at 2600.555 kb on + strand, within ABID97_RS12530at 2600.555 kb on + strand, within ABID97_RS12530at 2600.556 kb on - strand, within ABID97_RS12530at 2600.556 kb on - strand, within ABID97_RS12530at 2600.758 kb on + strand, within ABID97_RS12530at 2600.758 kb on + strand, within ABID97_RS12530at 2600.759 kb on - strand, within ABID97_RS12530at 2600.759 kb on - strand, within ABID97_RS12530at 2600.989 kb on + strand, within ABID97_RS12530at 2600.989 kb on + strand, within ABID97_RS12530at 2601.367 kb on + strand, within ABID97_RS12530at 2601.368 kb on - strand, within ABID97_RS12530at 2601.370 kb on + strand, within ABID97_RS12530at 2601.370 kb on + strand, within ABID97_RS12530at 2601.816 kb on + strand, within ABID97_RS12535at 2602.029 kb on + strand, within ABID97_RS12535at 2602.372 kb on - strand, within ABID97_RS12535at 2602.443 kb on + strand, within ABID97_RS12535at 2602.444 kb on - strand, within ABID97_RS12535

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,599,848 + ABID97_RS12525 0.84 -0.1
2,599,848 + ABID97_RS12525 0.84 -0.5
2,599,848 + ABID97_RS12525 0.84 +1.0
2,600,184 - +1.0
2,600,184 - -0.5
2,600,555 + ABID97_RS12530 0.28 -0.1
2,600,555 + ABID97_RS12530 0.28 +0.9
2,600,555 + ABID97_RS12530 0.28 +0.0
2,600,556 - ABID97_RS12530 0.28 -1.1
2,600,556 - ABID97_RS12530 0.28 +0.6
2,600,758 + ABID97_RS12530 0.43 -0.5
2,600,758 + ABID97_RS12530 0.43 +0.4
2,600,759 - ABID97_RS12530 0.43 -0.2
2,600,759 - ABID97_RS12530 0.43 +0.1
2,600,989 + ABID97_RS12530 0.60 -0.8
2,600,989 + ABID97_RS12530 0.60 +0.2
2,601,367 + ABID97_RS12530 0.87 +0.2
2,601,368 - ABID97_RS12530 0.87 -0.9
2,601,370 + ABID97_RS12530 0.88 +0.1
2,601,370 + ABID97_RS12530 0.88 +1.1
2,601,816 + ABID97_RS12535 0.20 -1.7
2,602,029 + ABID97_RS12535 0.36 -0.8
2,602,372 - ABID97_RS12535 0.62 -1.0
2,602,443 + ABID97_RS12535 0.68 -0.0
2,602,444 - ABID97_RS12535 0.68 -0.1

Or see this region's nucleotide sequence