Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11740

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11735 and ABID97_RS11740 are separated by 371 nucleotidesABID97_RS11740 and ABID97_RS11745 are separated by 434 nucleotidesABID97_RS11745 and ABID97_RS11750 are separated by 81 nucleotides ABID97_RS11735: ABID97_RS11735 - PDR/VanB family oxidoreductase, at 2,426,992 to 2,427,963 _RS11735 ABID97_RS11740: ABID97_RS11740 - JAB domain-containing protein, at 2,428,335 to 2,428,472 _RS11740 ABID97_RS11745: ABID97_RS11745 - ParB N-terminal domain-containing protein, at 2,428,907 to 2,429,179 _RS11745 ABID97_RS11750: ABID97_RS11750 - trimeric intracellular cation channel family protein, at 2,429,261 to 2,429,878 _RS11750 Position (kb) 2428 2429Strain fitness (log2 ratio) -1 0 1at 2427.486 kb on - strand, within ABID97_RS11735at 2427.494 kb on - strand, within ABID97_RS11735at 2427.655 kb on + strand, within ABID97_RS11735at 2427.879 kb on + strandat 2427.880 kb on - strandat 2427.880 kb on - strandat 2428.277 kb on + strandat 2428.444 kb on - strand, within ABID97_RS11740at 2429.098 kb on - strand, within ABID97_RS11745at 2429.279 kb on + strandat 2429.280 kb on - strandat 2429.450 kb on + strand, within ABID97_RS11750at 2429.450 kb on + strand, within ABID97_RS11750

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,427,486 - ABID97_RS11735 0.51 -0.2
2,427,494 - ABID97_RS11735 0.52 +0.2
2,427,655 + ABID97_RS11735 0.68 -1.2
2,427,879 + +0.2
2,427,880 - -0.6
2,427,880 - +0.0
2,428,277 + -0.3
2,428,444 - ABID97_RS11740 0.79 -1.2
2,429,098 - ABID97_RS11745 0.70 -0.0
2,429,279 + +0.2
2,429,280 - -1.1
2,429,450 + ABID97_RS11750 0.31 +0.4
2,429,450 + ABID97_RS11750 0.31 -0.2

Or see this region's nucleotide sequence