Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11255 and ABID97_RS11260 are separated by 15 nucleotides ABID97_RS11260 and ABID97_RS11265 are separated by 122 nucleotides ABID97_RS11265 and ABID97_RS11270 are separated by 376 nucleotides ABID97_RS11270 and ABID97_RS11275 are separated by 201 nucleotides
ABID97_RS11255: ABID97_RS11255 - type 1 glutamine amidotransferase domain-containing protein, at 2,326,736 to 2,327,578
_RS11255
ABID97_RS11260: ABID97_RS11260 - type 1 glutamine amidotransferase domain-containing protein, at 2,327,594 to 2,328,301
_RS11260
ABID97_RS11265: ABID97_RS11265 - LysR family transcriptional regulator, at 2,328,424 to 2,329,320
_RS11265
ABID97_RS11270: ABID97_RS11270 - AlpA family transcriptional regulator, at 2,329,697 to 2,330,035
_RS11270
ABID97_RS11275: ABID97_RS11275 - hypothetical protein, at 2,330,237 to 2,330,677
_RS11275
Position (kb)
2328
2329
2330 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2327.436 kb on + strand, within ABID97_RS11255 at 2328.073 kb on - strand, within ABID97_RS11260 at 2328.201 kb on + strand, within ABID97_RS11260 at 2328.201 kb on + strand, within ABID97_RS11260 at 2328.305 kb on + strand at 2328.305 kb on + strand at 2328.305 kb on + strand at 2328.305 kb on + strand at 2328.306 kb on - strand at 2328.306 kb on - strand at 2328.306 kb on - strand at 2328.306 kb on - strand at 2328.306 kb on - strand at 2328.739 kb on + strand, within ABID97_RS11265 at 2328.739 kb on + strand, within ABID97_RS11265 at 2329.256 kb on - strand at 2329.483 kb on + strand at 2329.505 kb on - strand at 2330.092 kb on - strand at 2330.092 kb on - strand at 2330.128 kb on + strand at 2330.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,327,436 + ABID97_RS11255 0.83 -0.8 2,328,073 - ABID97_RS11260 0.68 -0.5 2,328,201 + ABID97_RS11260 0.86 +0.5 2,328,201 + ABID97_RS11260 0.86 -0.1 2,328,305 + -0.4 2,328,305 + +0.6 2,328,305 + -0.4 2,328,305 + -0.6 2,328,306 - -0.4 2,328,306 - +0.5 2,328,306 - +0.9 2,328,306 - +0.1 2,328,306 - +0.9 2,328,739 + ABID97_RS11265 0.35 -1.4 2,328,739 + ABID97_RS11265 0.35 -0.9 2,329,256 - -1.5 2,329,483 + +0.7 2,329,505 - -0.1 2,330,092 - +2.8 2,330,092 - -0.9 2,330,128 + +1.0 2,330,129 - -0.4
Or see this region's nucleotide sequence