Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11265

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11255 and ABID97_RS11260 are separated by 15 nucleotidesABID97_RS11260 and ABID97_RS11265 are separated by 122 nucleotidesABID97_RS11265 and ABID97_RS11270 are separated by 376 nucleotidesABID97_RS11270 and ABID97_RS11275 are separated by 201 nucleotides ABID97_RS11255: ABID97_RS11255 - type 1 glutamine amidotransferase domain-containing protein, at 2,326,736 to 2,327,578 _RS11255 ABID97_RS11260: ABID97_RS11260 - type 1 glutamine amidotransferase domain-containing protein, at 2,327,594 to 2,328,301 _RS11260 ABID97_RS11265: ABID97_RS11265 - LysR family transcriptional regulator, at 2,328,424 to 2,329,320 _RS11265 ABID97_RS11270: ABID97_RS11270 - AlpA family transcriptional regulator, at 2,329,697 to 2,330,035 _RS11270 ABID97_RS11275: ABID97_RS11275 - hypothetical protein, at 2,330,237 to 2,330,677 _RS11275 Position (kb) 2328 2329 2330Strain fitness (log2 ratio) -1 0 1 2 3at 2327.436 kb on + strand, within ABID97_RS11255at 2328.073 kb on - strand, within ABID97_RS11260at 2328.201 kb on + strand, within ABID97_RS11260at 2328.201 kb on + strand, within ABID97_RS11260at 2328.305 kb on + strandat 2328.305 kb on + strandat 2328.305 kb on + strandat 2328.305 kb on + strandat 2328.306 kb on - strandat 2328.306 kb on - strandat 2328.306 kb on - strandat 2328.306 kb on - strandat 2328.306 kb on - strandat 2328.739 kb on + strand, within ABID97_RS11265at 2328.739 kb on + strand, within ABID97_RS11265at 2329.256 kb on - strandat 2329.483 kb on + strandat 2329.505 kb on - strandat 2330.092 kb on - strandat 2330.092 kb on - strandat 2330.128 kb on + strandat 2330.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,327,436 + ABID97_RS11255 0.83 -0.8
2,328,073 - ABID97_RS11260 0.68 -0.5
2,328,201 + ABID97_RS11260 0.86 +0.5
2,328,201 + ABID97_RS11260 0.86 -0.1
2,328,305 + -0.4
2,328,305 + +0.6
2,328,305 + -0.4
2,328,305 + -0.6
2,328,306 - -0.4
2,328,306 - +0.5
2,328,306 - +0.9
2,328,306 - +0.1
2,328,306 - +0.9
2,328,739 + ABID97_RS11265 0.35 -1.4
2,328,739 + ABID97_RS11265 0.35 -0.9
2,329,256 - -1.5
2,329,483 + +0.7
2,329,505 - -0.1
2,330,092 - +2.8
2,330,092 - -0.9
2,330,128 + +1.0
2,330,129 - -0.4

Or see this region's nucleotide sequence