Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10030

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10025 and ABID97_RS10030 are separated by 7 nucleotidesABID97_RS10030 and ABID97_RS10035 are separated by 196 nucleotidesABID97_RS10035 and ABID97_RS10040 are separated by 16 nucleotides ABID97_RS10025: ABID97_RS10025 - DNA ligase D, at 2,083,717 to 2,086,309 _RS10025 ABID97_RS10030: ABID97_RS10030 - hypothetical protein, at 2,086,317 to 2,086,559 _RS10030 ABID97_RS10035: ABID97_RS10035 - dihydrofolate reductase, at 2,086,756 to 2,087,283 _RS10035 ABID97_RS10040: ABID97_RS10040 - thymidylate synthase, at 2,087,300 to 2,088,139 _RS10040 Position (kb) 2086 2087Strain fitness (log2 ratio) -1 0 1at 2085.487 kb on + strand, within ABID97_RS10025at 2086.229 kb on + strandat 2086.513 kb on + strand, within ABID97_RS10030at 2086.514 kb on - strand, within ABID97_RS10030at 2086.514 kb on - strand, within ABID97_RS10030at 2086.576 kb on + strandat 2086.577 kb on - strandat 2086.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,085,487 + ABID97_RS10025 0.68 -0.5
2,086,229 + -0.4
2,086,513 + ABID97_RS10030 0.81 -0.7
2,086,514 - ABID97_RS10030 0.81 -1.0
2,086,514 - ABID97_RS10030 0.81 -0.7
2,086,576 + +0.2
2,086,577 - +0.5
2,086,577 - -0.4

Or see this region's nucleotide sequence