Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09405

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09400 and ABID97_RS09405 are separated by 19 nucleotidesABID97_RS09405 and ABID97_RS09410 are separated by 58 nucleotidesABID97_RS09410 and ABID97_RS09415 are separated by 24 nucleotides ABID97_RS09400: ABID97_RS09400 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 1,975,076 to 1,977,526 _RS09400 ABID97_RS09405: ABID97_RS09405 - xanthine dehydrogenase family protein subunit M, at 1,977,546 to 1,978,337 _RS09405 ABID97_RS09410: ABID97_RS09410 - MoxR family ATPase, at 1,978,396 to 1,979,298 _RS09410 ABID97_RS09415: ABID97_RS09415 - VWA domain-containing protein, at 1,979,323 to 1,980,537 _RS09415 Position (kb) 1977 1978 1979Strain fitness (log2 ratio) -1 0 1at 1976.919 kb on - strand, within ABID97_RS09400at 1976.933 kb on + strand, within ABID97_RS09400at 1976.978 kb on + strand, within ABID97_RS09400at 1977.014 kb on + strand, within ABID97_RS09400at 1977.015 kb on - strand, within ABID97_RS09400at 1977.180 kb on - strand, within ABID97_RS09400at 1977.180 kb on - strand, within ABID97_RS09400at 1977.224 kb on + strand, within ABID97_RS09400at 1977.225 kb on - strand, within ABID97_RS09400at 1977.549 kb on + strandat 1977.550 kb on - strandat 1977.802 kb on - strand, within ABID97_RS09405at 1978.447 kb on + strandat 1978.630 kb on + strand, within ABID97_RS09410at 1978.643 kb on - strand, within ABID97_RS09410at 1978.714 kb on + strand, within ABID97_RS09410at 1978.726 kb on + strand, within ABID97_RS09410at 1978.841 kb on - strand, within ABID97_RS09410at 1978.853 kb on - strand, within ABID97_RS09410at 1978.967 kb on - strand, within ABID97_RS09410

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,976,919 - ABID97_RS09400 0.75 -0.9
1,976,933 + ABID97_RS09400 0.76 +1.6
1,976,978 + ABID97_RS09400 0.78 +1.0
1,977,014 + ABID97_RS09400 0.79 -0.3
1,977,015 - ABID97_RS09400 0.79 +0.3
1,977,180 - ABID97_RS09400 0.86 +0.7
1,977,180 - ABID97_RS09400 0.86 -0.4
1,977,224 + ABID97_RS09400 0.88 +1.0
1,977,225 - ABID97_RS09400 0.88 -0.8
1,977,549 + +0.7
1,977,550 - -0.4
1,977,802 - ABID97_RS09405 0.32 -0.9
1,978,447 + -0.5
1,978,630 + ABID97_RS09410 0.26 +1.2
1,978,643 - ABID97_RS09410 0.27 +0.4
1,978,714 + ABID97_RS09410 0.35 -0.4
1,978,726 + ABID97_RS09410 0.37 +0.8
1,978,841 - ABID97_RS09410 0.49 -0.1
1,978,853 - ABID97_RS09410 0.51 -0.2
1,978,967 - ABID97_RS09410 0.63 -0.3

Or see this region's nucleotide sequence