Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09360

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09350 and ABID97_RS09355 overlap by 4 nucleotidesABID97_RS09355 and ABID97_RS09360 are separated by 33 nucleotidesABID97_RS09360 and ABID97_RS09365 overlap by 4 nucleotides ABID97_RS09350: ABID97_RS09350 - ABC transporter ATP-binding protein, at 1,966,079 to 1,966,849 _RS09350 ABID97_RS09355: ABID97_RS09355 - ABC transporter ATP-binding protein, at 1,966,846 to 1,967,559 _RS09355 ABID97_RS09360: ABID97_RS09360 - Zn-dependent hydrolase, at 1,967,593 to 1,968,849 _RS09360 ABID97_RS09365: ABID97_RS09365 - M81 family metallopeptidase, at 1,968,846 to 1,970,318 _RS09365 Position (kb) 1967 1968 1969Strain fitness (log2 ratio) -1 0 1 2at 1967.459 kb on - strand, within ABID97_RS09355at 1967.459 kb on - strand, within ABID97_RS09355at 1967.890 kb on + strand, within ABID97_RS09360at 1968.164 kb on - strand, within ABID97_RS09360at 1968.253 kb on + strand, within ABID97_RS09360at 1968.253 kb on + strand, within ABID97_RS09360at 1968.416 kb on - strand, within ABID97_RS09360at 1968.578 kb on - strand, within ABID97_RS09360at 1968.691 kb on + strand, within ABID97_RS09360at 1969.083 kb on + strand, within ABID97_RS09365at 1969.332 kb on + strand, within ABID97_RS09365at 1969.332 kb on + strand, within ABID97_RS09365at 1969.332 kb on + strand, within ABID97_RS09365at 1969.662 kb on + strand, within ABID97_RS09365

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,967,459 - ABID97_RS09355 0.86 +0.3
1,967,459 - ABID97_RS09355 0.86 +0.0
1,967,890 + ABID97_RS09360 0.24 -1.0
1,968,164 - ABID97_RS09360 0.45 +0.4
1,968,253 + ABID97_RS09360 0.53 +0.9
1,968,253 + ABID97_RS09360 0.53 +0.0
1,968,416 - ABID97_RS09360 0.65 +1.1
1,968,578 - ABID97_RS09360 0.78 +0.3
1,968,691 + ABID97_RS09360 0.87 +0.7
1,969,083 + ABID97_RS09365 0.16 +2.5
1,969,332 + ABID97_RS09365 0.33 -0.2
1,969,332 + ABID97_RS09365 0.33 +0.3
1,969,332 + ABID97_RS09365 0.33 -0.7
1,969,662 + ABID97_RS09365 0.55 +0.2

Or see this region's nucleotide sequence