Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09345 and ABID97_RS09350 overlap by 4 nucleotides ABID97_RS09350 and ABID97_RS09355 overlap by 4 nucleotides ABID97_RS09355 and ABID97_RS09360 are separated by 33 nucleotides
ABID97_RS09345: ABID97_RS09345 - branched-chain amino acid ABC transporter permease, at 1,965,120 to 1,966,082
_RS09345
ABID97_RS09350: ABID97_RS09350 - ABC transporter ATP-binding protein, at 1,966,079 to 1,966,849
_RS09350
ABID97_RS09355: ABID97_RS09355 - ABC transporter ATP-binding protein, at 1,966,846 to 1,967,559
_RS09355
ABID97_RS09360: ABID97_RS09360 - Zn-dependent hydrolase, at 1,967,593 to 1,968,849
_RS09360
Position (kb) 1966
1967
1968 Strain fitness (log2 ratio) -1
0
1 at 1965.888 kb on + strand, within ABID97_RS09345 at 1967.459 kb on - strand, within ABID97_RS09355 at 1967.459 kb on - strand, within ABID97_RS09355 at 1967.890 kb on + strand, within ABID97_RS09360 at 1968.164 kb on - strand, within ABID97_RS09360 at 1968.253 kb on + strand, within ABID97_RS09360 at 1968.253 kb on + strand, within ABID97_RS09360 at 1968.416 kb on - strand, within ABID97_RS09360
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,965,888 + ABID97_RS09345 0.80 +0.2 1,967,459 - ABID97_RS09355 0.86 +0.3 1,967,459 - ABID97_RS09355 0.86 +0.0 1,967,890 + ABID97_RS09360 0.24 -1.0 1,968,164 - ABID97_RS09360 0.45 +0.4 1,968,253 + ABID97_RS09360 0.53 +0.9 1,968,253 + ABID97_RS09360 0.53 +0.0 1,968,416 - ABID97_RS09360 0.65 +1.1
Or see this region's nucleotide sequence