Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08815

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08805 and ABID97_RS08810 overlap by 4 nucleotidesABID97_RS08810 and ABID97_RS08815 overlap by 4 nucleotidesABID97_RS08815 and ABID97_RS08820 overlap by 4 nucleotidesABID97_RS08820 and ABID97_RS08825 are separated by 159 nucleotides ABID97_RS08805: ABID97_RS08805 - 3-hydroxybutyryl-CoA dehydrogenase, at 1,843,780 to 1,844,784 _RS08805 ABID97_RS08810: ABID97_RS08810 - alpha/beta hydrolase, at 1,844,781 to 1,845,581 _RS08810 ABID97_RS08815: ABID97_RS08815 - zinc-binding dehydrogenase, at 1,845,578 to 1,846,456 _RS08815 ABID97_RS08820: ABID97_RS08820 - MarR family transcriptional regulator, at 1,846,453 to 1,846,929 _RS08820 ABID97_RS08825: ABID97_RS08825 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 1,847,089 to 1,849,281 _RS08825 Position (kb) 1845 1846 1847Strain fitness (log2 ratio) -1 0 1at 1844.668 kb on + strand, within ABID97_RS08805at 1844.668 kb on + strand, within ABID97_RS08805at 1844.668 kb on + strand, within ABID97_RS08805at 1844.669 kb on - strand, within ABID97_RS08805at 1844.669 kb on - strand, within ABID97_RS08805at 1844.674 kb on + strand, within ABID97_RS08805at 1844.675 kb on - strand, within ABID97_RS08805at 1844.721 kb on + strandat 1845.156 kb on + strand, within ABID97_RS08810at 1846.454 kb on + strandat 1846.455 kb on - strandat 1846.455 kb on - strandat 1847.206 kb on + strandat 1847.353 kb on + strand, within ABID97_RS08825

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,844,668 + ABID97_RS08805 0.88 -0.7
1,844,668 + ABID97_RS08805 0.88 +0.8
1,844,668 + ABID97_RS08805 0.88 +0.1
1,844,669 - ABID97_RS08805 0.88 +0.2
1,844,669 - ABID97_RS08805 0.88 +0.1
1,844,674 + ABID97_RS08805 0.89 -0.5
1,844,675 - ABID97_RS08805 0.89 -0.2
1,844,721 + -0.5
1,845,156 + ABID97_RS08810 0.47 +1.2
1,846,454 + +0.7
1,846,455 - +0.2
1,846,455 - +0.2
1,847,206 + -0.5
1,847,353 + ABID97_RS08825 0.12 +0.2

Or see this region's nucleotide sequence