Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08485 and ABID97_RS08490 are separated by 18 nucleotides ABID97_RS08490 and ABID97_RS08495 are separated by 27 nucleotides ABID97_RS08495 and ABID97_RS08500 are separated by 13 nucleotides ABID97_RS08500 and ABID97_RS08505 are separated by 13 nucleotides
ABID97_RS08485: ABID97_RS08485 - succinate dehydrogenase assembly factor 2, at 1,782,837 to 1,783,160
_RS08485
ABID97_RS08490: ABID97_RS08490 - succinate dehydrogenase iron-sulfur subunit, at 1,783,179 to 1,783,880
_RS08490
ABID97_RS08495: ABID97_RS08495 - succinate dehydrogenase flavoprotein subunit, at 1,783,908 to 1,785,716
_RS08495
ABID97_RS08500: ABID97_RS08500 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 1,785,730 to 1,786,095
_RS08500
ABID97_RS08505: ABID97_RS08505 - succinate dehydrogenase, cytochrome b556 subunit, at 1,786,109 to 1,786,555
_RS08505
Position (kb)
1783
1784
1785
1786 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1783.910 kb on - strand at 1783.910 kb on - strand at 1783.910 kb on - strand at 1783.910 kb on - strand at 1783.910 kb on - strand at 1786.114 kb on - strand at 1786.649 kb on - strand at 1786.710 kb on + strand at 1786.710 kb on + strand at 1786.710 kb on + strand at 1786.710 kb on + strand at 1786.711 kb on - strand at 1786.711 kb on - strand at 1786.711 kb on - strand at 1786.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,783,910 - -1.1 1,783,910 - -0.7 1,783,910 - +0.4 1,783,910 - -0.7 1,783,910 - -2.2 1,786,114 - +0.6 1,786,649 - -3.1 1,786,710 + -2.7 1,786,710 + -1.0 1,786,710 + -0.9 1,786,710 + -0.4 1,786,711 - +0.4 1,786,711 - -0.6 1,786,711 - -1.4 1,786,711 - -0.7
Or see this region's nucleotide sequence