Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06735

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06730 and ABID97_RS06735 are separated by 16 nucleotidesABID97_RS06735 and ABID97_RS06740 are separated by 8 nucleotidesABID97_RS06740 and ABID97_RS06745 are separated by 287 nucleotides ABID97_RS06730: ABID97_RS06730 - zinc-dependent alcohol dehydrogenase, at 1,418,785 to 1,419,966 _RS06730 ABID97_RS06735: ABID97_RS06735 - hypothetical protein, at 1,419,983 to 1,420,504 _RS06735 ABID97_RS06740: ABID97_RS06740 - hypothetical protein, at 1,420,513 to 1,421,070 _RS06740 ABID97_RS06745: ABID97_RS06745 - ATP-dependent DNA helicase RecQ, at 1,421,358 to 1,423,121 _RS06745 Position (kb) 1419 1420 1421Strain fitness (log2 ratio) -2 -1 0 1 2at 1419.064 kb on + strand, within ABID97_RS06730at 1419.065 kb on - strand, within ABID97_RS06730at 1419.085 kb on + strand, within ABID97_RS06730at 1419.136 kb on + strand, within ABID97_RS06730at 1419.136 kb on + strand, within ABID97_RS06730at 1419.137 kb on - strand, within ABID97_RS06730at 1419.137 kb on - strand, within ABID97_RS06730at 1419.184 kb on + strand, within ABID97_RS06730at 1419.184 kb on + strand, within ABID97_RS06730at 1419.445 kb on + strand, within ABID97_RS06730at 1419.446 kb on - strand, within ABID97_RS06730at 1420.364 kb on + strandat 1420.365 kb on - strand, within ABID97_RS06735at 1420.892 kb on + strand, within ABID97_RS06740at 1420.892 kb on + strand, within ABID97_RS06740at 1420.892 kb on + strand, within ABID97_RS06740at 1420.893 kb on - strand, within ABID97_RS06740at 1420.893 kb on - strand, within ABID97_RS06740at 1421.363 kb on + strandat 1421.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,419,064 + ABID97_RS06730 0.24 -0.5
1,419,065 - ABID97_RS06730 0.24 +0.9
1,419,085 + ABID97_RS06730 0.25 -0.3
1,419,136 + ABID97_RS06730 0.30 -0.5
1,419,136 + ABID97_RS06730 0.30 +0.7
1,419,137 - ABID97_RS06730 0.30 -0.9
1,419,137 - ABID97_RS06730 0.30 +0.3
1,419,184 + ABID97_RS06730 0.34 -0.9
1,419,184 + ABID97_RS06730 0.34 -1.1
1,419,445 + ABID97_RS06730 0.56 +0.2
1,419,446 - ABID97_RS06730 0.56 -1.0
1,420,364 + +2.2
1,420,365 - ABID97_RS06735 0.73 -2.5
1,420,892 + ABID97_RS06740 0.68 +0.2
1,420,892 + ABID97_RS06740 0.68 -0.2
1,420,892 + ABID97_RS06740 0.68 +1.2
1,420,893 - ABID97_RS06740 0.68 -0.5
1,420,893 - ABID97_RS06740 0.68 +0.2
1,421,363 + -0.1
1,421,364 - +0.1

Or see this region's nucleotide sequence