Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06380

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS06375 and ABID97_RS06380 are separated by 18 nucleotidesABID97_RS06380 and ABID97_RS06385 are separated by 73 nucleotides ABID97_RS06375: ABID97_RS06375 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,344,942 to 1,346,291 _RS06375 ABID97_RS06380: ABID97_RS06380 - 50S ribosomal protein L11 methyltransferase, at 1,346,310 to 1,347,194 _RS06380 ABID97_RS06385: ABID97_RS06385 - zinc-ribbon and DUF3426 domain-containing protein, at 1,347,268 to 1,348,572 _RS06385 Position (kb) 1346 1347 1348Strain fitness (log2 ratio) -2 -1 0 1at 1346.296 kb on + strandat 1346.820 kb on + strand, within ABID97_RS06380at 1347.123 kb on + strandat 1347.123 kb on + strandat 1347.123 kb on + strandat 1347.123 kb on + strandat 1347.123 kb on + strandat 1347.123 kb on + strandat 1347.123 kb on + strandat 1347.124 kb on - strandat 1347.124 kb on - strandat 1347.132 kb on + strandat 1347.253 kb on + strandat 1347.253 kb on + strandat 1347.253 kb on + strandat 1347.254 kb on - strandat 1347.254 kb on - strandat 1347.254 kb on - strandat 1347.254 kb on - strandat 1347.605 kb on + strand, within ABID97_RS06385at 1347.606 kb on - strand, within ABID97_RS06385at 1347.786 kb on + strand, within ABID97_RS06385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
1,346,296 + -1.1
1,346,820 + ABID97_RS06380 0.58 -1.4
1,347,123 + -0.0
1,347,123 + -0.2
1,347,123 + -1.9
1,347,123 + +0.3
1,347,123 + -0.7
1,347,123 + +0.7
1,347,123 + -0.7
1,347,124 - -0.2
1,347,124 - -0.6
1,347,132 + -0.9
1,347,253 + -0.6
1,347,253 + -0.3
1,347,253 + +0.2
1,347,254 - -0.9
1,347,254 - +0.1
1,347,254 - +0.6
1,347,254 - +1.7
1,347,605 + ABID97_RS06385 0.26 +0.9
1,347,606 - ABID97_RS06385 0.26 +0.2
1,347,786 + ABID97_RS06385 0.40 +0.0

Or see this region's nucleotide sequence