Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05880 and ABID97_RS05885 are separated by 31 nucleotides ABID97_RS05885 and ABID97_RS05890 are separated by 10 nucleotides ABID97_RS05890 and ABID97_RS05895 are separated by 96 nucleotides ABID97_RS05895 and ABID97_RS05900 are separated by 42 nucleotides
ABID97_RS05880: ABID97_RS05880 - alpha/beta fold hydrolase, at 1,243,157 to 1,244,053
_RS05880
ABID97_RS05885: ABID97_RS05885 - thioesterase family protein, at 1,244,085 to 1,244,915
_RS05885
ABID97_RS05890: ABID97_RS05890 - SDR family oxidoreductase, at 1,244,926 to 1,245,666
_RS05890
ABID97_RS05895: ABID97_RS05895 - 2-hydroxychromene-2-carboxylate isomerase, at 1,245,763 to 1,246,356
_RS05895
ABID97_RS05900: ABID97_RS05900 - enoyl-CoA hydratase, at 1,246,399 to 1,247,163
_RS05900
Position (kb) 1244
1245
1246 Strain fitness (log2 ratio) -1
0
1 at 1244.081 kb on + strand at 1244.172 kb on + strand, within ABID97_RS05885 at 1244.682 kb on + strand, within ABID97_RS05885 at 1244.683 kb on - strand, within ABID97_RS05885 at 1244.683 kb on - strand, within ABID97_RS05885 at 1244.745 kb on + strand, within ABID97_RS05885 at 1244.746 kb on - strand, within ABID97_RS05885 at 1244.901 kb on + strand at 1244.902 kb on - strand at 1244.914 kb on - strand at 1245.232 kb on + strand, within ABID97_RS05890 at 1245.536 kb on - strand, within ABID97_RS05890 at 1245.784 kb on + strand at 1245.946 kb on + strand, within ABID97_RS05895 at 1245.946 kb on + strand, within ABID97_RS05895 at 1245.947 kb on - strand, within ABID97_RS05895 at 1245.983 kb on - strand, within ABID97_RS05895 at 1246.087 kb on + strand, within ABID97_RS05895 at 1246.087 kb on + strand, within ABID97_RS05895 at 1246.489 kb on + strand, within ABID97_RS05900 at 1246.489 kb on + strand, within ABID97_RS05900 at 1246.490 kb on - strand, within ABID97_RS05900
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,244,081 + -0.2 1,244,172 + ABID97_RS05885 0.10 -0.1 1,244,682 + ABID97_RS05885 0.72 -0.6 1,244,683 - ABID97_RS05885 0.72 -0.1 1,244,683 - ABID97_RS05885 0.72 +0.5 1,244,745 + ABID97_RS05885 0.79 +1.2 1,244,746 - ABID97_RS05885 0.80 +0.0 1,244,901 + -0.1 1,244,902 - -0.4 1,244,914 - +0.4 1,245,232 + ABID97_RS05890 0.41 -0.4 1,245,536 - ABID97_RS05890 0.82 -0.6 1,245,784 + +0.4 1,245,946 + ABID97_RS05895 0.31 +0.0 1,245,946 + ABID97_RS05895 0.31 -0.4 1,245,947 - ABID97_RS05895 0.31 -0.8 1,245,983 - ABID97_RS05895 0.37 +0.2 1,246,087 + ABID97_RS05895 0.55 -0.4 1,246,087 + ABID97_RS05895 0.55 -0.4 1,246,489 + ABID97_RS05900 0.12 +0.0 1,246,489 + ABID97_RS05900 0.12 -0.3 1,246,490 - ABID97_RS05900 0.12 -1.1
Or see this region's nucleotide sequence