Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05165 and ABID97_RS05170 are separated by 65 nucleotides ABID97_RS05170 and ABID97_RS05175 are separated by 138 nucleotides ABID97_RS05175 and ABID97_RS05180 are separated by 32 nucleotides ABID97_RS05180 and ABID97_RS05185 are separated by 69 nucleotides
ABID97_RS05165: ABID97_RS05165 - hypothetical protein, at 1,088,011 to 1,088,577
_RS05165
ABID97_RS05170: ABID97_RS05170 - type VI secretion system tube protein Hcp, at 1,088,643 to 1,089,125
_RS05170
ABID97_RS05175: ABID97_RS05175 - type VI secretion system contractile sheath large subunit, at 1,089,264 to 1,090,760
_RS05175
ABID97_RS05180: ABID97_RS05180 - type VI secretion system contractile sheath small subunit, at 1,090,793 to 1,091,308
_RS05180
ABID97_RS05185: ABID97_RS05185 - type VI secretion system protein TssA, at 1,091,378 to 1,092,409
_RS05185
Position (kb)
1089
1090
1091 Strain fitness (log2 ratio)
-1
0
1
2 at 1088.729 kb on - strand, within ABID97_RS05170 at 1088.945 kb on - strand, within ABID97_RS05170 at 1088.945 kb on - strand, within ABID97_RS05170 at 1089.132 kb on + strand at 1089.132 kb on + strand at 1089.133 kb on - strand at 1089.203 kb on + strand at 1089.335 kb on - strand at 1089.364 kb on + strand at 1089.364 kb on + strand at 1089.365 kb on - strand at 1089.365 kb on - strand at 1089.367 kb on + strand at 1089.470 kb on - strand, within ABID97_RS05175 at 1089.934 kb on + strand, within ABID97_RS05175 at 1090.264 kb on + strand, within ABID97_RS05175 at 1090.321 kb on + strand, within ABID97_RS05175 at 1090.456 kb on + strand, within ABID97_RS05175 at 1090.457 kb on - strand, within ABID97_RS05175 at 1090.457 kb on - strand, within ABID97_RS05175 at 1090.457 kb on - strand, within ABID97_RS05175 at 1090.457 kb on - strand, within ABID97_RS05175 at 1090.457 kb on - strand, within ABID97_RS05175
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,088,729 - ABID97_RS05170 0.18 -0.7 1,088,945 - ABID97_RS05170 0.63 +1.1 1,088,945 - ABID97_RS05170 0.63 -1.0 1,089,132 + -0.7 1,089,132 + +0.8 1,089,133 - -0.6 1,089,203 + +1.4 1,089,335 - -0.2 1,089,364 + -1.0 1,089,364 + +1.9 1,089,365 - -0.4 1,089,365 - -0.4 1,089,367 + +1.9 1,089,470 - ABID97_RS05175 0.14 -0.9 1,089,934 + ABID97_RS05175 0.45 +1.2 1,090,264 + ABID97_RS05175 0.67 +0.9 1,090,321 + ABID97_RS05175 0.71 -1.5 1,090,456 + ABID97_RS05175 0.80 -0.4 1,090,457 - ABID97_RS05175 0.80 -0.8 1,090,457 - ABID97_RS05175 0.80 -0.5 1,090,457 - ABID97_RS05175 0.80 -0.4 1,090,457 - ABID97_RS05175 0.80 -0.3 1,090,457 - ABID97_RS05175 0.80 -0.3
Or see this region's nucleotide sequence