Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05175

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05165 and ABID97_RS05170 are separated by 65 nucleotidesABID97_RS05170 and ABID97_RS05175 are separated by 138 nucleotidesABID97_RS05175 and ABID97_RS05180 are separated by 32 nucleotidesABID97_RS05180 and ABID97_RS05185 are separated by 69 nucleotides ABID97_RS05165: ABID97_RS05165 - hypothetical protein, at 1,088,011 to 1,088,577 _RS05165 ABID97_RS05170: ABID97_RS05170 - type VI secretion system tube protein Hcp, at 1,088,643 to 1,089,125 _RS05170 ABID97_RS05175: ABID97_RS05175 - type VI secretion system contractile sheath large subunit, at 1,089,264 to 1,090,760 _RS05175 ABID97_RS05180: ABID97_RS05180 - type VI secretion system contractile sheath small subunit, at 1,090,793 to 1,091,308 _RS05180 ABID97_RS05185: ABID97_RS05185 - type VI secretion system protein TssA, at 1,091,378 to 1,092,409 _RS05185 Position (kb) 1089 1090 1091Strain fitness (log2 ratio) -1 0 1 2at 1088.729 kb on - strand, within ABID97_RS05170at 1088.945 kb on - strand, within ABID97_RS05170at 1088.945 kb on - strand, within ABID97_RS05170at 1089.132 kb on + strandat 1089.132 kb on + strandat 1089.133 kb on - strandat 1089.203 kb on + strandat 1089.335 kb on - strandat 1089.364 kb on + strandat 1089.364 kb on + strandat 1089.365 kb on - strandat 1089.365 kb on - strandat 1089.367 kb on + strandat 1089.470 kb on - strand, within ABID97_RS05175at 1089.934 kb on + strand, within ABID97_RS05175at 1090.264 kb on + strand, within ABID97_RS05175at 1090.321 kb on + strand, within ABID97_RS05175at 1090.456 kb on + strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175at 1090.457 kb on - strand, within ABID97_RS05175

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,088,729 - ABID97_RS05170 0.18 -0.7
1,088,945 - ABID97_RS05170 0.63 +1.1
1,088,945 - ABID97_RS05170 0.63 -1.0
1,089,132 + -0.7
1,089,132 + +0.8
1,089,133 - -0.6
1,089,203 + +1.4
1,089,335 - -0.2
1,089,364 + -1.0
1,089,364 + +1.9
1,089,365 - -0.4
1,089,365 - -0.4
1,089,367 + +1.9
1,089,470 - ABID97_RS05175 0.14 -0.9
1,089,934 + ABID97_RS05175 0.45 +1.2
1,090,264 + ABID97_RS05175 0.67 +0.9
1,090,321 + ABID97_RS05175 0.71 -1.5
1,090,456 + ABID97_RS05175 0.80 -0.4
1,090,457 - ABID97_RS05175 0.80 -0.8
1,090,457 - ABID97_RS05175 0.80 -0.5
1,090,457 - ABID97_RS05175 0.80 -0.4
1,090,457 - ABID97_RS05175 0.80 -0.3
1,090,457 - ABID97_RS05175 0.80 -0.3

Or see this region's nucleotide sequence