Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02575

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02570 and ABID97_RS02575 are separated by 90 nucleotidesABID97_RS02575 and ABID97_RS02580 are separated by 18 nucleotidesABID97_RS02580 and ABID97_RS02585 are separated by 136 nucleotides ABID97_RS02570: ABID97_RS02570 - M20 family metallopeptidase, at 526,146 to 527,657 _RS02570 ABID97_RS02575: ABID97_RS02575 - DUF72 domain-containing protein, at 527,748 to 528,545 _RS02575 ABID97_RS02580: ABID97_RS02580 - polymer-forming cytoskeletal protein, at 528,564 to 529,079 _RS02580 ABID97_RS02585: ABID97_RS02585 - ion transporter, at 529,216 to 530,139 _RS02585 Position (kb) 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 526.768 kb on + strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.027 kb on - strand, within ABID97_RS02570at 527.027 kb on - strand, within ABID97_RS02570at 527.027 kb on - strand, within ABID97_RS02570at 527.098 kb on + strand, within ABID97_RS02570at 527.098 kb on + strand, within ABID97_RS02570at 527.098 kb on + strand, within ABID97_RS02570at 527.099 kb on - strand, within ABID97_RS02570at 527.099 kb on - strand, within ABID97_RS02570at 527.099 kb on - strandat 527.099 kb on - strand, within ABID97_RS02570at 527.099 kb on - strand, within ABID97_RS02570at 527.113 kb on + strand, within ABID97_RS02570at 527.114 kb on - strand, within ABID97_RS02570at 527.114 kb on - strand, within ABID97_RS02570at 527.114 kb on - strand, within ABID97_RS02570at 527.209 kb on + strand, within ABID97_RS02570at 527.245 kb on + strand, within ABID97_RS02570at 527.263 kb on + strand, within ABID97_RS02570at 527.263 kb on + strand, within ABID97_RS02570at 527.263 kb on + strand, within ABID97_RS02570at 527.264 kb on - strand, within ABID97_RS02570at 527.264 kb on - strand, within ABID97_RS02570at 527.264 kb on - strand, within ABID97_RS02570at 527.333 kb on - strand, within ABID97_RS02570at 527.333 kb on - strand, within ABID97_RS02570at 527.333 kb on - strand, within ABID97_RS02570at 527.333 kb on - strand, within ABID97_RS02570at 527.489 kb on - strand, within ABID97_RS02570at 527.545 kb on + strandat 527.545 kb on + strandat 527.545 kb on + strandat 527.545 kb on + strandat 527.545 kb on + strandat 527.545 kb on + strandat 527.546 kb on - strandat 527.546 kb on - strandat 527.546 kb on - strandat 527.716 kb on - strandat 527.716 kb on - strandat 527.811 kb on + strandat 527.811 kb on + strandat 527.812 kb on - strandat 527.812 kb on - strandat 527.812 kb on - strandat 527.812 kb on - strandat 527.835 kb on + strand, within ABID97_RS02575at 527.835 kb on + strand, within ABID97_RS02575at 527.872 kb on - strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.259 kb on - strand, within ABID97_RS02575at 528.259 kb on - strand, within ABID97_RS02575at 528.330 kb on + strand, within ABID97_RS02575at 528.373 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.650 kb on - strand, within ABID97_RS02580at 529.073 kb on + strandat 529.073 kb on + strandat 529.073 kb on + strandat 529.073 kb on + strandat 529.074 kb on - strandat 529.110 kb on - strandat 529.110 kb on - strandat 529.110 kb on - strandat 529.163 kb on - strandat 529.163 kb on - strandat 529.163 kb on - strandat 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.498 kb on + strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585at 529.499 kb on - strand, within ABID97_RS02585

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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526,768 + ABID97_RS02570 0.41 +0.7
526,768 + ABID97_RS02570 0.41 +0.2
526,768 + ABID97_RS02570 0.41 +0.0
526,768 + ABID97_RS02570 0.41 +0.0
526,769 - ABID97_RS02570 0.41 +0.4
526,769 - ABID97_RS02570 0.41 -0.2
526,769 - ABID97_RS02570 0.41 +0.3
526,769 - ABID97_RS02570 0.41 +0.1
526,769 - ABID97_RS02570 0.41 +1.3
527,026 + ABID97_RS02570 0.58 +0.0
527,026 + ABID97_RS02570 0.58 +1.1
527,026 + ABID97_RS02570 0.58 +0.4
527,026 + ABID97_RS02570 0.58 +0.6
527,026 + ABID97_RS02570 0.58 +0.1
527,026 + ABID97_RS02570 0.58 +2.4
527,026 + ABID97_RS02570 0.58 +0.3
527,026 + ABID97_RS02570 0.58 -0.2
527,026 + ABID97_RS02570 0.58 +0.0
527,026 + ABID97_RS02570 0.58 -0.2
527,027 - ABID97_RS02570 0.58 -1.2
527,027 - ABID97_RS02570 0.58 -0.8
527,027 - ABID97_RS02570 0.58 +0.3
527,098 + ABID97_RS02570 0.63 +0.1
527,098 + ABID97_RS02570 0.63 +1.4
527,098 + ABID97_RS02570 0.63 -0.0
527,099 - ABID97_RS02570 0.63 +0.8
527,099 - ABID97_RS02570 0.63 +1.2
527,099 - +3.4
527,099 - ABID97_RS02570 0.63 -0.0
527,099 - ABID97_RS02570 0.63 +0.1
527,113 + ABID97_RS02570 0.64 +0.6
527,114 - ABID97_RS02570 0.64 -0.4
527,114 - ABID97_RS02570 0.64 -0.3
527,114 - ABID97_RS02570 0.64 -0.5
527,209 + ABID97_RS02570 0.70 -0.1
527,245 + ABID97_RS02570 0.73 -0.2
527,263 + ABID97_RS02570 0.74 -0.4
527,263 + ABID97_RS02570 0.74 -0.1
527,263 + ABID97_RS02570 0.74 +1.0
527,264 - ABID97_RS02570 0.74 +0.3
527,264 - ABID97_RS02570 0.74 +0.4
527,264 - ABID97_RS02570 0.74 +3.0
527,333 - ABID97_RS02570 0.79 +0.3
527,333 - ABID97_RS02570 0.79 +0.0
527,333 - ABID97_RS02570 0.79 +0.4
527,333 - ABID97_RS02570 0.79 +1.0
527,489 - ABID97_RS02570 0.89 +0.4
527,545 + +0.2
527,545 + -0.1
527,545 + -0.4
527,545 + +1.3
527,545 + -0.5
527,545 + +1.6
527,546 - +0.1
527,546 - -0.4
527,546 - +0.1
527,716 - +1.3
527,716 - +0.2
527,811 + -0.6
527,811 + +0.3
527,812 - -0.2
527,812 - -1.0
527,812 - -0.7
527,812 - +0.6
527,835 + ABID97_RS02575 0.11 -0.3
527,835 + ABID97_RS02575 0.11 +0.5
527,872 - ABID97_RS02575 0.16 +0.6
527,913 + ABID97_RS02575 0.21 +0.1
527,913 + ABID97_RS02575 0.21 -0.5
527,913 + ABID97_RS02575 0.21 +4.8
527,913 + ABID97_RS02575 0.21 +0.5
527,913 + ABID97_RS02575 0.21 +0.4
527,913 + ABID97_RS02575 0.21 -1.9
527,913 + ABID97_RS02575 0.21 +1.8
527,913 + ABID97_RS02575 0.21 -0.2
527,913 + ABID97_RS02575 0.21 -0.1
527,913 + ABID97_RS02575 0.21 -0.1
527,913 + ABID97_RS02575 0.21 -0.5
527,913 + ABID97_RS02575 0.21 +0.3
527,914 - ABID97_RS02575 0.21 +0.4
527,914 - ABID97_RS02575 0.21 -0.9
527,914 - ABID97_RS02575 0.21 -1.2
527,914 - ABID97_RS02575 0.21 +2.8
527,914 - ABID97_RS02575 0.21 -0.5
527,914 - ABID97_RS02575 0.21 -0.6
527,914 - ABID97_RS02575 0.21 -0.7
527,916 + ABID97_RS02575 0.21 +1.4
527,916 + ABID97_RS02575 0.21 -0.0
527,916 + ABID97_RS02575 0.21 -0.2
527,916 + ABID97_RS02575 0.21 +0.3
527,916 + ABID97_RS02575 0.21 -0.2
527,916 + ABID97_RS02575 0.21 +0.1
527,916 + ABID97_RS02575 0.21 -0.9
527,917 - ABID97_RS02575 0.21 +1.8
527,917 - ABID97_RS02575 0.21 -0.2
527,917 - ABID97_RS02575 0.21 +1.1
527,917 - ABID97_RS02575 0.21 -0.1
527,917 - ABID97_RS02575 0.21 +0.5
527,917 - ABID97_RS02575 0.21 -0.6
527,917 - ABID97_RS02575 0.21 -0.3
528,258 + ABID97_RS02575 0.64 +0.9
528,258 + ABID97_RS02575 0.64 -0.1
528,258 + ABID97_RS02575 0.64 +0.1
528,259 - ABID97_RS02575 0.64 -0.3
528,259 - ABID97_RS02575 0.64 +0.0
528,330 + ABID97_RS02575 0.73 -0.7
528,373 - ABID97_RS02575 0.78 +0.8
528,454 - ABID97_RS02575 0.88 +1.4
528,454 - ABID97_RS02575 0.88 -1.4
528,454 - ABID97_RS02575 0.88 +0.6
528,650 - ABID97_RS02580 0.17 +0.2
529,073 + +1.0
529,073 + -0.0
529,073 + -0.7
529,073 + +0.6
529,074 - +2.4
529,110 - -0.5
529,110 - -0.2
529,110 - +1.8
529,163 - +0.1
529,163 - +1.6
529,163 - -0.1
529,498 + ABID97_RS02585 0.31 +1.4
529,498 + ABID97_RS02585 0.31 -1.4
529,498 + ABID97_RS02585 0.31 -0.6
529,498 + ABID97_RS02585 0.31 -0.5
529,498 + ABID97_RS02585 0.31 -0.1
529,498 + ABID97_RS02585 0.31 +1.6
529,498 + ABID97_RS02585 0.31 +0.3
529,498 + ABID97_RS02585 0.31 +0.2
529,499 - ABID97_RS02585 0.31 -0.1
529,499 - ABID97_RS02585 0.31 -0.7
529,499 - ABID97_RS02585 0.31 +0.3
529,499 - ABID97_RS02585 0.31 -0.1
529,499 - ABID97_RS02585 0.31 +1.3

Or see this region's nucleotide sequence