Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02415 and ABID97_RS02420 overlap by 4 nucleotides ABID97_RS02420 and ABID97_RS02425 are separated by 97 nucleotides ABID97_RS02425 and ABID97_RS02430 are separated by 76 nucleotides
ABID97_RS02415: ABID97_RS02415 - M4 family metallopeptidase, at 485,526 to 486,596
_RS02415
ABID97_RS02420: ABID97_RS02420 - protealysin inhibitor emfourin, at 486,593 to 486,931
_RS02420
ABID97_RS02425: ABID97_RS02425 - putative quinol monooxygenase, at 487,029 to 487,337
_RS02425
ABID97_RS02430: ABID97_RS02430 - hypothetical protein, at 487,414 to 488,010
_RS02430
Position (kb) 486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 485.838 kb on + strand, within ABID97_RS02415 at 485.838 kb on + strand, within ABID97_RS02415 at 485.838 kb on + strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.839 kb on - strand, within ABID97_RS02415 at 485.844 kb on + strand, within ABID97_RS02415 at 485.845 kb on - strand, within ABID97_RS02415 at 485.859 kb on + strand, within ABID97_RS02415 at 485.859 kb on + strand, within ABID97_RS02415 at 485.860 kb on - strand, within ABID97_RS02415 at 485.860 kb on - strand, within ABID97_RS02415 at 485.868 kb on + strand, within ABID97_RS02415 at 485.868 kb on + strand, within ABID97_RS02415 at 485.869 kb on - strand, within ABID97_RS02415 at 485.869 kb on - strand, within ABID97_RS02415 at 485.869 kb on - strand, within ABID97_RS02415 at 485.935 kb on - strand, within ABID97_RS02415 at 485.935 kb on - strand, within ABID97_RS02415 at 485.935 kb on - strand, within ABID97_RS02415 at 485.946 kb on + strand, within ABID97_RS02415 at 486.087 kb on + strand, within ABID97_RS02415 at 486.264 kb on + strand, within ABID97_RS02415 at 486.438 kb on + strand, within ABID97_RS02415 at 486.439 kb on - strand, within ABID97_RS02415 at 486.505 kb on + strand at 486.506 kb on - strand at 486.689 kb on + strand, within ABID97_RS02420 at 486.689 kb on + strand, within ABID97_RS02420 at 486.689 kb on + strand, within ABID97_RS02420 at 486.690 kb on - strand, within ABID97_RS02420 at 486.690 kb on - strand, within ABID97_RS02420 at 486.690 kb on - strand, within ABID97_RS02420 at 486.690 kb on - strand, within ABID97_RS02420 at 486.809 kb on + strand, within ABID97_RS02420 at 486.810 kb on - strand, within ABID97_RS02420 at 486.810 kb on - strand, within ABID97_RS02420 at 486.810 kb on - strand, within ABID97_RS02420 at 486.986 kb on - strand at 486.986 kb on - strand at 486.986 kb on - strand at 487.199 kb on + strand, within ABID97_RS02425 at 487.200 kb on - strand, within ABID97_RS02425 at 487.200 kb on - strand, within ABID97_RS02425 at 487.370 kb on - strand at 487.528 kb on + strand, within ABID97_RS02430 at 487.540 kb on + strand, within ABID97_RS02430 at 487.540 kb on + strand, within ABID97_RS02430 at 487.540 kb on + strand, within ABID97_RS02430 at 487.540 kb on + strand, within ABID97_RS02430 at 487.541 kb on - strand, within ABID97_RS02430 at 487.684 kb on + strand, within ABID97_RS02430 at 487.685 kb on - strand, within ABID97_RS02430 at 487.721 kb on + strand, within ABID97_RS02430 at 487.722 kb on - strand, within ABID97_RS02430 at 487.729 kb on + strand, within ABID97_RS02430 at 487.729 kb on + strand, within ABID97_RS02430 at 487.729 kb on + strand, within ABID97_RS02430 at 487.867 kb on + strand, within ABID97_RS02430 at 487.867 kb on + strand, within ABID97_RS02430 at 487.897 kb on + strand, within ABID97_RS02430 at 487.897 kb on + strand, within ABID97_RS02430 at 487.898 kb on - strand, within ABID97_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 485,838 + ABID97_RS02415 0.29 -0.3 485,838 + ABID97_RS02415 0.29 -0.4 485,838 + ABID97_RS02415 0.29 +0.0 485,839 - ABID97_RS02415 0.29 -0.3 485,839 - ABID97_RS02415 0.29 -0.1 485,839 - ABID97_RS02415 0.29 -0.8 485,839 - ABID97_RS02415 0.29 -0.1 485,839 - ABID97_RS02415 0.29 -0.7 485,839 - ABID97_RS02415 0.29 +0.8 485,839 - ABID97_RS02415 0.29 -0.2 485,839 - ABID97_RS02415 0.29 -0.2 485,844 + ABID97_RS02415 0.30 +0.0 485,845 - ABID97_RS02415 0.30 +1.0 485,859 + ABID97_RS02415 0.31 -0.5 485,859 + ABID97_RS02415 0.31 +0.2 485,860 - ABID97_RS02415 0.31 +0.6 485,860 - ABID97_RS02415 0.31 +0.4 485,868 + ABID97_RS02415 0.32 -0.2 485,868 + ABID97_RS02415 0.32 -0.4 485,869 - ABID97_RS02415 0.32 -0.2 485,869 - ABID97_RS02415 0.32 +0.0 485,869 - ABID97_RS02415 0.32 +0.7 485,935 - ABID97_RS02415 0.38 -0.2 485,935 - ABID97_RS02415 0.38 -0.4 485,935 - ABID97_RS02415 0.38 +0.5 485,946 + ABID97_RS02415 0.39 -1.1 486,087 + ABID97_RS02415 0.52 -0.3 486,264 + ABID97_RS02415 0.69 -0.2 486,438 + ABID97_RS02415 0.85 +1.0 486,439 - ABID97_RS02415 0.85 +0.1 486,505 + -0.5 486,506 - -0.3 486,689 + ABID97_RS02420 0.28 -1.8 486,689 + ABID97_RS02420 0.28 +1.0 486,689 + ABID97_RS02420 0.28 -2.8 486,690 - ABID97_RS02420 0.29 -2.2 486,690 - ABID97_RS02420 0.29 -1.0 486,690 - ABID97_RS02420 0.29 +1.0 486,690 - ABID97_RS02420 0.29 -1.9 486,809 + ABID97_RS02420 0.64 -2.4 486,810 - ABID97_RS02420 0.64 +1.8 486,810 - ABID97_RS02420 0.64 -1.7 486,810 - ABID97_RS02420 0.64 -0.7 486,986 - +0.5 486,986 - +2.4 486,986 - +0.6 487,199 + ABID97_RS02425 0.55 -0.2 487,200 - ABID97_RS02425 0.55 -0.0 487,200 - ABID97_RS02425 0.55 -0.2 487,370 - -0.1 487,528 + ABID97_RS02430 0.19 -1.2 487,540 + ABID97_RS02430 0.21 -0.1 487,540 + ABID97_RS02430 0.21 +1.8 487,540 + ABID97_RS02430 0.21 -0.1 487,540 + ABID97_RS02430 0.21 -0.6 487,541 - ABID97_RS02430 0.21 +3.4 487,684 + ABID97_RS02430 0.45 +0.2 487,685 - ABID97_RS02430 0.45 -0.1 487,721 + ABID97_RS02430 0.51 -0.1 487,722 - ABID97_RS02430 0.52 -0.2 487,729 + ABID97_RS02430 0.53 +0.5 487,729 + ABID97_RS02430 0.53 -0.4 487,729 + ABID97_RS02430 0.53 +0.8 487,867 + ABID97_RS02430 0.76 +0.6 487,867 + ABID97_RS02430 0.76 -0.5 487,897 + ABID97_RS02430 0.81 +0.9 487,897 + ABID97_RS02430 0.81 -0.1 487,898 - ABID97_RS02430 0.81 -0.1
Or see this region's nucleotide sequence