Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01995 and ABID97_RS02000 are separated by 2 nucleotides ABID97_RS02000 and ABID97_RS02005 overlap by 4 nucleotides ABID97_RS02005 and ABID97_RS02010 overlap by 46 nucleotides ABID97_RS02010 and ABID97_RS02015 are separated by 25 nucleotides
ABID97_RS01995: ABID97_RS01995 - PAS domain S-box protein, at 396,277 to 398,325
_RS01995
ABID97_RS02000: ABID97_RS02000 - carbon-nitrogen hydrolase family protein, at 398,328 to 399,143
_RS02000
ABID97_RS02005: ABID97_RS02005 - YhdP family protein, at 399,140 to 403,003
_RS02005
ABID97_RS02010: ABID97_RS02010 - hypothetical protein, at 402,958 to 403,323
_RS02010
ABID97_RS02015: ABID97_RS02015 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 403,349 to 406,141
_RS02015
Position (kb) 399
400
401
402
403
404 Strain fitness (log2 ratio) -1
0
1
2 at 398.644 kb on + strand, within ABID97_RS02000 at 398.791 kb on + strand, within ABID97_RS02000 at 398.792 kb on - strand, within ABID97_RS02000 at 398.812 kb on + strand, within ABID97_RS02000 at 398.813 kb on - strand, within ABID97_RS02000 at 399.023 kb on - strand, within ABID97_RS02000 at 399.697 kb on - strand, within ABID97_RS02005 at 399.697 kb on - strand, within ABID97_RS02005 at 400.125 kb on + strand, within ABID97_RS02005 at 400.125 kb on + strand, within ABID97_RS02005 at 400.125 kb on + strand, within ABID97_RS02005 at 400.126 kb on - strand, within ABID97_RS02005 at 400.126 kb on - strand, within ABID97_RS02005 at 400.126 kb on - strand, within ABID97_RS02005 at 400.145 kb on - strand, within ABID97_RS02005 at 400.296 kb on + strand, within ABID97_RS02005 at 400.524 kb on + strand, within ABID97_RS02005 at 400.524 kb on + strand, within ABID97_RS02005 at 400.524 kb on + strand, within ABID97_RS02005 at 400.524 kb on + strand, within ABID97_RS02005 at 400.524 kb on + strand, within ABID97_RS02005 at 400.524 kb on + strand, within ABID97_RS02005 at 400.525 kb on - strand, within ABID97_RS02005 at 401.092 kb on - strand, within ABID97_RS02005 at 401.448 kb on + strand, within ABID97_RS02005 at 401.454 kb on + strand, within ABID97_RS02005 at 401.454 kb on + strand, within ABID97_RS02005 at 401.455 kb on - strand, within ABID97_RS02005 at 401.455 kb on - strand, within ABID97_RS02005 at 401.455 kb on - strand, within ABID97_RS02005 at 401.455 kb on - strand, within ABID97_RS02005 at 401.455 kb on - strand, within ABID97_RS02005 at 401.589 kb on + strand, within ABID97_RS02005 at 401.590 kb on - strand, within ABID97_RS02005 at 401.590 kb on - strand, within ABID97_RS02005 at 401.590 kb on - strand, within ABID97_RS02005 at 402.135 kb on + strand, within ABID97_RS02005 at 402.135 kb on + strand, within ABID97_RS02005 at 402.135 kb on + strand, within ABID97_RS02005 at 402.541 kb on - strand, within ABID97_RS02005 at 402.541 kb on - strand, within ABID97_RS02005 at 402.541 kb on - strand, within ABID97_RS02005 at 402.567 kb on + strand, within ABID97_RS02005 at 402.567 kb on + strand, within ABID97_RS02005 at 402.567 kb on + strand, within ABID97_RS02005 at 402.567 kb on + strand, within ABID97_RS02005 at 402.568 kb on - strand, within ABID97_RS02005 at 402.582 kb on + strand, within ABID97_RS02005 at 402.583 kb on - strand, within ABID97_RS02005 at 402.940 kb on + strand at 402.942 kb on + strand at 402.942 kb on + strand at 402.943 kb on - strand at 402.943 kb on - strand at 402.943 kb on - strand at 402.943 kb on - strand at 402.943 kb on - strand at 402.943 kb on - strand at 403.092 kb on + strand, within ABID97_RS02010 at 403.093 kb on - strand, within ABID97_RS02010 at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.482 kb on - strand at 403.482 kb on - strand at 403.544 kb on + strand at 403.850 kb on + strand, within ABID97_RS02015 at 403.850 kb on + strand, within ABID97_RS02015 at 403.850 kb on + strand, within ABID97_RS02015 at 403.850 kb on + strand, within ABID97_RS02015 at 403.851 kb on - strand, within ABID97_RS02015 at 403.857 kb on - strand, within ABID97_RS02015 at 403.946 kb on + strand, within ABID97_RS02015 at 403.946 kb on + strand, within ABID97_RS02015 at 403.946 kb on + strand, within ABID97_RS02015 at 403.947 kb on - strand, within ABID97_RS02015 at 403.947 kb on - strand, within ABID97_RS02015 at 403.947 kb on - strand, within ABID97_RS02015
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 398,644 + ABID97_RS02000 0.39 -0.2 398,791 + ABID97_RS02000 0.57 -0.2 398,792 - ABID97_RS02000 0.57 -0.2 398,812 + ABID97_RS02000 0.59 -0.3 398,813 - ABID97_RS02000 0.59 -0.0 399,023 - ABID97_RS02000 0.85 -1.5 399,697 - ABID97_RS02005 0.14 +0.4 399,697 - ABID97_RS02005 0.14 -0.4 400,125 + ABID97_RS02005 0.25 +0.6 400,125 + ABID97_RS02005 0.25 +0.5 400,125 + ABID97_RS02005 0.25 -0.8 400,126 - ABID97_RS02005 0.26 -0.7 400,126 - ABID97_RS02005 0.26 +0.8 400,126 - ABID97_RS02005 0.26 -0.0 400,145 - ABID97_RS02005 0.26 -0.0 400,296 + ABID97_RS02005 0.30 +0.1 400,524 + ABID97_RS02005 0.36 -0.6 400,524 + ABID97_RS02005 0.36 +0.0 400,524 + ABID97_RS02005 0.36 -0.1 400,524 + ABID97_RS02005 0.36 -0.0 400,524 + ABID97_RS02005 0.36 -0.7 400,524 + ABID97_RS02005 0.36 -0.2 400,525 - ABID97_RS02005 0.36 +0.3 401,092 - ABID97_RS02005 0.51 -0.2 401,448 + ABID97_RS02005 0.60 +0.5 401,454 + ABID97_RS02005 0.60 +0.1 401,454 + ABID97_RS02005 0.60 -1.5 401,455 - ABID97_RS02005 0.60 +0.1 401,455 - ABID97_RS02005 0.60 -0.5 401,455 - ABID97_RS02005 0.60 +0.2 401,455 - ABID97_RS02005 0.60 +0.4 401,455 - ABID97_RS02005 0.60 +2.3 401,589 + ABID97_RS02005 0.63 -0.4 401,590 - ABID97_RS02005 0.63 -0.1 401,590 - ABID97_RS02005 0.63 -1.1 401,590 - ABID97_RS02005 0.63 +0.7 402,135 + ABID97_RS02005 0.78 +1.4 402,135 + ABID97_RS02005 0.78 +0.0 402,135 + ABID97_RS02005 0.78 -0.7 402,541 - ABID97_RS02005 0.88 +0.3 402,541 - ABID97_RS02005 0.88 -0.1 402,541 - ABID97_RS02005 0.88 +0.2 402,567 + ABID97_RS02005 0.89 -0.1 402,567 + ABID97_RS02005 0.89 -0.8 402,567 + ABID97_RS02005 0.89 -0.5 402,567 + ABID97_RS02005 0.89 +1.2 402,568 - ABID97_RS02005 0.89 +2.4 402,582 + ABID97_RS02005 0.89 +0.5 402,583 - ABID97_RS02005 0.89 -0.8 402,940 + +0.7 402,942 + +0.2 402,942 + -0.6 402,943 - +0.7 402,943 - +0.8 402,943 - -0.1 402,943 - -1.2 402,943 - +0.1 402,943 - +0.4 403,092 + ABID97_RS02010 0.37 -0.4 403,093 - ABID97_RS02010 0.37 +0.8 403,387 + -0.2 403,387 + -0.6 403,387 + -0.5 403,387 + -0.4 403,388 - -1.0 403,388 - +0.2 403,388 - +0.1 403,482 - -0.5 403,482 - +0.2 403,544 + -1.0 403,850 + ABID97_RS02015 0.18 +0.6 403,850 + ABID97_RS02015 0.18 +0.5 403,850 + ABID97_RS02015 0.18 +1.6 403,850 + ABID97_RS02015 0.18 -0.9 403,851 - ABID97_RS02015 0.18 +0.8 403,857 - ABID97_RS02015 0.18 +0.9 403,946 + ABID97_RS02015 0.21 -0.1 403,946 + ABID97_RS02015 0.21 -0.8 403,946 + ABID97_RS02015 0.21 +0.3 403,947 - ABID97_RS02015 0.21 -0.9 403,947 - ABID97_RS02015 0.21 +1.4 403,947 - ABID97_RS02015 0.21 +2.1
Or see this region's nucleotide sequence