Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01975 and ABID97_RS01980 overlap by 2 nucleotides ABID97_RS01980 and ABID97_RS01985 are separated by 194 nucleotides ABID97_RS01985 and ABID97_RS01990 are separated by 14 nucleotides ABID97_RS01990 and ABID97_RS01995 are separated by 40 nucleotides
ABID97_RS01975: ABID97_RS01975 - MltA domain-containing protein, at 393,428 to 394,576
_RS01975
ABID97_RS01980: ABID97_RS01980 - hypothetical protein, at 394,575 to 394,739
_RS01980
ABID97_RS01985: ABID97_RS01985 - OmpA family protein, at 394,934 to 395,595
_RS01985
ABID97_RS01990: ABID97_RS01990 - response regulator, at 395,610 to 396,236
_RS01990
ABID97_RS01995: ABID97_RS01995 - PAS domain S-box protein, at 396,277 to 398,325
_RS01995
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.077 kb on + strand, within ABID97_RS01975 at 394.078 kb on - strand, within ABID97_RS01975 at 394.078 kb on - strand, within ABID97_RS01975 at 394.116 kb on + strand, within ABID97_RS01975 at 394.116 kb on + strand, within ABID97_RS01975 at 394.116 kb on + strand, within ABID97_RS01975 at 394.117 kb on - strand, within ABID97_RS01975 at 394.117 kb on - strand, within ABID97_RS01975 at 394.117 kb on - strand, within ABID97_RS01975 at 394.161 kb on + strand, within ABID97_RS01975 at 394.161 kb on + strand, within ABID97_RS01975 at 394.162 kb on - strand, within ABID97_RS01975 at 394.173 kb on + strand, within ABID97_RS01975 at 394.173 kb on + strand, within ABID97_RS01975 at 394.174 kb on - strand, within ABID97_RS01975 at 394.176 kb on + strand, within ABID97_RS01975 at 394.177 kb on - strand, within ABID97_RS01975 at 394.177 kb on - strand, within ABID97_RS01975 at 394.177 kb on - strand, within ABID97_RS01975 at 394.177 kb on - strand, within ABID97_RS01975 at 394.535 kb on + strand at 394.536 kb on - strand at 394.621 kb on + strand, within ABID97_RS01980 at 394.621 kb on + strand, within ABID97_RS01980 at 394.621 kb on + strand, within ABID97_RS01980 at 394.621 kb on + strand, within ABID97_RS01980 at 394.621 kb on + strand, within ABID97_RS01980 at 394.622 kb on - strand, within ABID97_RS01980 at 394.622 kb on - strand, within ABID97_RS01980 at 394.622 kb on - strand, within ABID97_RS01980 at 394.895 kb on + strand at 394.947 kb on + strand at 394.947 kb on + strand at 395.444 kb on + strand, within ABID97_RS01985 at 395.444 kb on + strand, within ABID97_RS01985 at 395.445 kb on - strand, within ABID97_RS01985 at 395.445 kb on - strand, within ABID97_RS01985 at 395.566 kb on + strand at 395.566 kb on + strand at 395.566 kb on + strand at 395.567 kb on - strand at 395.567 kb on - strand at 395.567 kb on - strand at 395.611 kb on + strand at 395.611 kb on + strand at 395.611 kb on + strand at 395.612 kb on - strand at 395.612 kb on - strand at 395.612 kb on - strand at 396.236 kb on + strand at 396.236 kb on + strand at 396.236 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 394,077 + ABID97_RS01975 0.56 +0.7 394,078 - ABID97_RS01975 0.57 +1.3 394,078 - ABID97_RS01975 0.57 +0.9 394,116 + ABID97_RS01975 0.60 +1.7 394,116 + ABID97_RS01975 0.60 +1.3 394,116 + ABID97_RS01975 0.60 +1.4 394,117 - ABID97_RS01975 0.60 +0.9 394,117 - ABID97_RS01975 0.60 +2.0 394,117 - ABID97_RS01975 0.60 +2.5 394,161 + ABID97_RS01975 0.64 +1.5 394,161 + ABID97_RS01975 0.64 +0.2 394,162 - ABID97_RS01975 0.64 +1.3 394,173 + ABID97_RS01975 0.65 +0.7 394,173 + ABID97_RS01975 0.65 +1.7 394,174 - ABID97_RS01975 0.65 +1.4 394,176 + ABID97_RS01975 0.65 +1.2 394,177 - ABID97_RS01975 0.65 +0.5 394,177 - ABID97_RS01975 0.65 +1.7 394,177 - ABID97_RS01975 0.65 +1.6 394,177 - ABID97_RS01975 0.65 +1.3 394,535 + +0.8 394,536 - +1.1 394,621 + ABID97_RS01980 0.28 -0.6 394,621 + ABID97_RS01980 0.28 +0.5 394,621 + ABID97_RS01980 0.28 -0.5 394,621 + ABID97_RS01980 0.28 -0.7 394,621 + ABID97_RS01980 0.28 -0.3 394,622 - ABID97_RS01980 0.28 -0.6 394,622 - ABID97_RS01980 0.28 -1.9 394,622 - ABID97_RS01980 0.28 +0.0 394,895 + +0.2 394,947 + +0.8 394,947 + +0.2 395,444 + ABID97_RS01985 0.77 -2.1 395,444 + ABID97_RS01985 0.77 -1.0 395,445 - ABID97_RS01985 0.77 -2.5 395,445 - ABID97_RS01985 0.77 -0.2 395,566 + -0.0 395,566 + -0.3 395,566 + -0.5 395,567 - +2.3 395,567 - -0.7 395,567 - -0.5 395,611 + +0.2 395,611 + +0.6 395,611 + +0.1 395,612 - -0.7 395,612 - +0.1 395,612 - -0.3 396,236 + +0.1 396,236 + -0.2 396,236 + +0.2
Or see this region's nucleotide sequence