Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00920 and ABID97_RS00925 are separated by 228 nucleotides ABID97_RS00925 and ABID97_RS00930 are separated by 91 nucleotides ABID97_RS00930 and ABID97_RS00935 are separated by 196 nucleotides
ABID97_RS00920: ABID97_RS00920 - ABC transporter permease, at 185,513 to 186,349
_RS00920
ABID97_RS00925: ABID97_RS00925 - MarR family transcriptional regulator, at 186,578 to 187,030
_RS00925
ABID97_RS00930: ABID97_RS00930 - organic hydroperoxide resistance protein, at 187,122 to 187,547
_RS00930
ABID97_RS00935: ABID97_RS00935 - DUF2855 family protein, at 187,744 to 188,859
_RS00935
Position (kb) 187
188 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 186.290 kb on + strand at 186.291 kb on - strand at 186.566 kb on - strand at 186.704 kb on + strand, within ABID97_RS00925 at 186.834 kb on - strand, within ABID97_RS00925 at 187.149 kb on + strand at 187.149 kb on + strand at 187.150 kb on - strand at 187.285 kb on - strand, within ABID97_RS00930 at 187.405 kb on - strand, within ABID97_RS00930 at 187.498 kb on - strand, within ABID97_RS00930 at 187.909 kb on + strand, within ABID97_RS00935 at 187.909 kb on + strand, within ABID97_RS00935 at 187.910 kb on - strand, within ABID97_RS00935 at 188.021 kb on - strand, within ABID97_RS00935 at 188.021 kb on - strand, within ABID97_RS00935 at 188.125 kb on + strand, within ABID97_RS00935 at 188.126 kb on - strand, within ABID97_RS00935 at 188.134 kb on + strand, within ABID97_RS00935 at 188.135 kb on - strand, within ABID97_RS00935 at 188.135 kb on - strand, within ABID97_RS00935 at 188.135 kb on - strand, within ABID97_RS00935 at 188.161 kb on + strand, within ABID97_RS00935 at 188.161 kb on + strand, within ABID97_RS00935 at 188.162 kb on - strand, within ABID97_RS00935 at 188.399 kb on - strand, within ABID97_RS00935 at 188.416 kb on + strand, within ABID97_RS00935 at 188.458 kb on + strand, within ABID97_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 186,290 + -0.1 186,291 - +3.3 186,566 - -0.2 186,704 + ABID97_RS00925 0.28 +0.1 186,834 - ABID97_RS00925 0.57 -0.4 187,149 + -0.2 187,149 + -0.4 187,150 - -0.3 187,285 - ABID97_RS00930 0.38 -0.3 187,405 - ABID97_RS00930 0.66 -0.9 187,498 - ABID97_RS00930 0.88 -1.2 187,909 + ABID97_RS00935 0.15 -0.6 187,909 + ABID97_RS00935 0.15 -0.5 187,910 - ABID97_RS00935 0.15 -1.0 188,021 - ABID97_RS00935 0.25 +0.5 188,021 - ABID97_RS00935 0.25 +0.3 188,125 + ABID97_RS00935 0.34 -2.2 188,126 - ABID97_RS00935 0.34 -0.3 188,134 + ABID97_RS00935 0.35 +2.0 188,135 - ABID97_RS00935 0.35 -1.4 188,135 - ABID97_RS00935 0.35 +0.5 188,135 - ABID97_RS00935 0.35 -0.1 188,161 + ABID97_RS00935 0.37 +1.0 188,161 + ABID97_RS00935 0.37 -0.8 188,162 - ABID97_RS00935 0.37 +0.5 188,399 - ABID97_RS00935 0.59 +0.7 188,416 + ABID97_RS00935 0.60 -2.4 188,458 + ABID97_RS00935 0.64 +0.8
Or see this region's nucleotide sequence