Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS24665

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS12365 and UW163_RS12370 are separated by 34 nucleotidesUW163_RS12370 and UW163_RS24665 are separated by 137 nucleotidesUW163_RS24665 and UW163_RS12375 are separated by 227 nucleotides UW163_RS12365: UW163_RS12365 - outer membrane protein assembly factor BamC, at 2,649,185 to 2,650,381 _RS12365 UW163_RS12370: UW163_RS12370 - MBL fold metallo-hydrolase, at 2,650,416 to 2,651,201 _RS12370 UW163_RS24665: UW163_RS24665 - hypothetical protein, at 2,651,339 to 2,651,617 _RS24665 UW163_RS12375: UW163_RS12375 - cupin domain-containing protein, at 2,651,845 to 2,653,074 _RS12375 Position (kb) 2651 2652Strain fitness (log2 ratio) -2 -1 0 1at 2650.780 kb on - strand, within UW163_RS12370at 2651.061 kb on - strand, within UW163_RS12370at 2651.222 kb on + strandat 2651.667 kb on + strandat 2651.667 kb on + strandat 2651.708 kb on + strandat 2651.709 kb on - strandat 2651.709 kb on - strandat 2651.781 kb on - strandat 2651.789 kb on + strandat 2651.790 kb on - strandat 2651.818 kb on + strandat 2651.889 kb on - strandat 2652.296 kb on + strand, within UW163_RS12375at 2652.453 kb on - strand, within UW163_RS12375

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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2,650,780 - UW163_RS12370 0.46 -0.5
2,651,061 - UW163_RS12370 0.82 -2.1
2,651,222 + +0.3
2,651,667 + -0.8
2,651,667 + -0.5
2,651,708 + -0.2
2,651,709 - -0.2
2,651,709 - +0.9
2,651,781 - +0.4
2,651,789 + +0.4
2,651,790 - +0.9
2,651,818 + +0.1
2,651,889 - +0.5
2,652,296 + UW163_RS12375 0.37 +0.5
2,652,453 - UW163_RS12375 0.49 +0.2

Or see this region's nucleotide sequence