Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS12365 and UW163_RS12370 are separated by 34 nucleotides UW163_RS12370 and UW163_RS24665 are separated by 137 nucleotides UW163_RS24665 and UW163_RS12375 are separated by 227 nucleotides
UW163_RS12365: UW163_RS12365 - outer membrane protein assembly factor BamC, at 2,649,185 to 2,650,381
_RS12365
UW163_RS12370: UW163_RS12370 - MBL fold metallo-hydrolase, at 2,650,416 to 2,651,201
_RS12370
UW163_RS24665: UW163_RS24665 - hypothetical protein, at 2,651,339 to 2,651,617
_RS24665
UW163_RS12375: UW163_RS12375 - cupin domain-containing protein, at 2,651,845 to 2,653,074
_RS12375
Position (kb)
2651
2652 Strain fitness (log2 ratio)
-2
-1
0
1 at 2650.780 kb on - strand, within UW163_RS12370 at 2651.061 kb on - strand, within UW163_RS12370 at 2651.222 kb on + strand at 2651.667 kb on + strand at 2651.667 kb on + strand at 2651.708 kb on + strand at 2651.709 kb on - strand at 2651.709 kb on - strand at 2651.781 kb on - strand at 2651.789 kb on + strand at 2651.790 kb on - strand at 2651.818 kb on + strand at 2651.889 kb on - strand at 2652.296 kb on + strand, within UW163_RS12375 at 2652.453 kb on - strand, within UW163_RS12375
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 2,650,780 - UW163_RS12370 0.46 -0.5 2,651,061 - UW163_RS12370 0.82 -2.1 2,651,222 + +0.3 2,651,667 + -0.8 2,651,667 + -0.5 2,651,708 + -0.2 2,651,709 - -0.2 2,651,709 - +0.9 2,651,781 - +0.4 2,651,789 + +0.4 2,651,790 - +0.9 2,651,818 + +0.1 2,651,889 - +0.5 2,652,296 + UW163_RS12375 0.37 +0.5 2,652,453 - UW163_RS12375 0.49 +0.2
Or see this region's nucleotide sequence