Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS24050 and UW163_RS24055 are separated by 697 nucleotides UW163_RS24055 and UW163_RS24060 are separated by 12 nucleotides UW163_RS24060 and UW163_RS24065 are separated by 27 nucleotides
UW163_RS24050: UW163_RS24050 - transposase, at 110,805 to 111,593
_RS24050
UW163_RS24055: UW163_RS24055 - hypothetical protein, at 112,291 to 115,407
_RS24055
UW163_RS24060: UW163_RS24060 - DUF2807 domain-containing protein, at 115,420 to 116,082
_RS24060
UW163_RS24065: UW163_RS24065 - ribbon-helix-helix protein, CopG family, at 116,110 to 116,469
_RS24065
Position (kb) 112
113
114
115
116 Strain fitness (log2 ratio) -2
-1
0
1
2 at 111.670 kb on + strand at 111.670 kb on + strand at 111.670 kb on + strand at 111.670 kb on + strand at 111.670 kb on + strand at 111.670 kb on + strand at 111.670 kb on + strand at 111.670 kb on + strand at 111.781 kb on + strand at 111.844 kb on - strand at 111.878 kb on + strand at 111.879 kb on - strand at 111.921 kb on + strand at 111.921 kb on + strand at 111.922 kb on - strand at 112.013 kb on + strand at 112.014 kb on - strand at 112.014 kb on - strand at 112.014 kb on - strand at 112.020 kb on + strand at 112.020 kb on + strand at 112.044 kb on + strand at 112.044 kb on + strand at 112.044 kb on + strand at 112.155 kb on + strand at 112.155 kb on + strand at 112.155 kb on + strand at 112.155 kb on + strand at 112.155 kb on + strand at 112.155 kb on + strand at 112.155 kb on + strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.156 kb on - strand at 112.159 kb on + strand at 112.159 kb on + strand at 112.159 kb on + strand at 112.159 kb on + strand at 112.159 kb on + strand at 112.160 kb on - strand at 112.168 kb on + strand at 112.169 kb on - strand at 112.178 kb on + strand at 112.182 kb on + strand at 112.182 kb on + strand at 112.183 kb on - strand at 112.183 kb on - strand at 112.183 kb on - strand at 112.186 kb on + strand at 112.186 kb on + strand at 112.186 kb on + strand at 112.186 kb on + strand at 112.187 kb on - strand at 112.187 kb on - strand at 112.187 kb on - strand at 112.187 kb on - strand at 112.187 kb on - strand at 112.266 kb on + strand at 112.267 kb on - strand at 112.292 kb on + strand at 112.292 kb on + strand at 112.292 kb on + strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.511 kb on - strand at 112.679 kb on - strand, within UW163_RS24055 at 112.730 kb on + strand, within UW163_RS24055 at 112.730 kb on + strand, within UW163_RS24055 at 112.731 kb on - strand, within UW163_RS24055 at 112.731 kb on - strand, within UW163_RS24055 at 112.731 kb on - strand, within UW163_RS24055 at 112.764 kb on + strand, within UW163_RS24055 at 112.764 kb on + strand, within UW163_RS24055 at 112.764 kb on + strand, within UW163_RS24055 at 112.764 kb on + strand, within UW163_RS24055 at 112.765 kb on - strand, within UW163_RS24055 at 112.765 kb on - strand, within UW163_RS24055 at 112.765 kb on - strand, within UW163_RS24055 at 112.765 kb on - strand, within UW163_RS24055 at 112.919 kb on + strand, within UW163_RS24055 at 112.919 kb on + strand, within UW163_RS24055 at 112.920 kb on - strand, within UW163_RS24055 at 112.928 kb on + strand, within UW163_RS24055 at 112.928 kb on + strand, within UW163_RS24055 at 113.270 kb on + strand, within UW163_RS24055 at 113.270 kb on + strand, within UW163_RS24055 at 113.270 kb on + strand, within UW163_RS24055 at 113.271 kb on - strand, within UW163_RS24055 at 113.271 kb on - strand, within UW163_RS24055 at 113.355 kb on + strand, within UW163_RS24055 at 113.355 kb on + strand, within UW163_RS24055 at 113.356 kb on - strand, within UW163_RS24055 at 113.403 kb on - strand, within UW163_RS24055 at 113.906 kb on + strand, within UW163_RS24055 at 113.906 kb on + strand, within UW163_RS24055 at 113.907 kb on - strand, within UW163_RS24055 at 113.907 kb on - strand, within UW163_RS24055 at 113.907 kb on - strand, within UW163_RS24055 at 113.907 kb on - strand, within UW163_RS24055 at 113.907 kb on - strand, within UW163_RS24055 at 113.907 kb on - strand, within UW163_RS24055 at 113.907 kb on - strand, within UW163_RS24055 at 113.915 kb on + strand, within UW163_RS24055 at 113.915 kb on + strand, within UW163_RS24055 at 113.915 kb on + strand, within UW163_RS24055 at 113.915 kb on + strand, within UW163_RS24055 at 113.915 kb on + strand, within UW163_RS24055 at 113.916 kb on - strand, within UW163_RS24055 at 113.916 kb on - strand, within UW163_RS24055 at 113.965 kb on + strand, within UW163_RS24055 at 113.965 kb on + strand, within UW163_RS24055 at 113.966 kb on - strand, within UW163_RS24055 at 113.966 kb on - strand, within UW163_RS24055 at 114.072 kb on + strand, within UW163_RS24055 at 114.073 kb on + strand, within UW163_RS24055 at 114.073 kb on + strand, within UW163_RS24055 at 114.073 kb on + strand, within UW163_RS24055 at 114.074 kb on - strand, within UW163_RS24055 at 114.074 kb on - strand, within UW163_RS24055 at 114.074 kb on - strand, within UW163_RS24055 at 114.366 kb on + strand, within UW163_RS24055 at 114.366 kb on + strand, within UW163_RS24055 at 114.366 kb on + strand, within UW163_RS24055 at 114.366 kb on + strand, within UW163_RS24055 at 114.366 kb on + strand, within UW163_RS24055 at 114.367 kb on - strand, within UW163_RS24055 at 114.367 kb on - strand, within UW163_RS24055 at 114.367 kb on - strand, within UW163_RS24055 at 114.367 kb on - strand, within UW163_RS24055 at 114.374 kb on + strand, within UW163_RS24055 at 114.375 kb on - strand, within UW163_RS24055 at 114.383 kb on + strand, within UW163_RS24055 at 114.383 kb on + strand, within UW163_RS24055 at 114.383 kb on + strand, within UW163_RS24055 at 114.383 kb on + strand, within UW163_RS24055 at 114.383 kb on + strand, within UW163_RS24055 at 114.383 kb on + strand, within UW163_RS24055 at 114.383 kb on + strand, within UW163_RS24055 at 114.384 kb on - strand, within UW163_RS24055 at 114.384 kb on - strand, within UW163_RS24055 at 114.384 kb on - strand, within UW163_RS24055 at 114.384 kb on - strand, within UW163_RS24055 at 114.384 kb on - strand, within UW163_RS24055 at 114.443 kb on + strand, within UW163_RS24055 at 114.443 kb on + strand, within UW163_RS24055 at 114.443 kb on + strand, within UW163_RS24055 at 114.443 kb on + strand, within UW163_RS24055 at 114.443 kb on + strand, within UW163_RS24055 at 114.444 kb on - strand, within UW163_RS24055 at 114.444 kb on - strand, within UW163_RS24055 at 114.444 kb on - strand, within UW163_RS24055 at 114.452 kb on + strand, within UW163_RS24055 at 114.453 kb on - strand, within UW163_RS24055 at 114.474 kb on + strand, within UW163_RS24055 at 114.476 kb on + strand, within UW163_RS24055 at 114.477 kb on - strand, within UW163_RS24055 at 114.477 kb on - strand, within UW163_RS24055 at 114.477 kb on - strand, within UW163_RS24055 at 114.566 kb on + strand, within UW163_RS24055 at 114.566 kb on + strand, within UW163_RS24055 at 114.566 kb on + strand, within UW163_RS24055 at 114.566 kb on + strand, within UW163_RS24055 at 114.567 kb on - strand, within UW163_RS24055 at 114.567 kb on - strand, within UW163_RS24055 at 114.567 kb on - strand, within UW163_RS24055 at 114.567 kb on - strand, within UW163_RS24055 at 114.644 kb on + strand, within UW163_RS24055 at 114.644 kb on + strand, within UW163_RS24055 at 114.644 kb on + strand, within UW163_RS24055 at 114.644 kb on + strand, within UW163_RS24055 at 114.644 kb on + strand, within UW163_RS24055 at 114.644 kb on + strand, within UW163_RS24055 at 114.645 kb on - strand, within UW163_RS24055 at 114.645 kb on - strand, within UW163_RS24055 at 114.645 kb on - strand, within UW163_RS24055 at 114.645 kb on - strand, within UW163_RS24055 at 114.695 kb on + strand, within UW163_RS24055 at 114.767 kb on + strand, within UW163_RS24055 at 114.768 kb on - strand, within UW163_RS24055 at 114.852 kb on - strand, within UW163_RS24055 at 114.920 kb on + strand, within UW163_RS24055 at 114.921 kb on - strand, within UW163_RS24055 at 114.921 kb on - strand, within UW163_RS24055 at 114.921 kb on - strand, within UW163_RS24055 at 115.082 kb on + strand, within UW163_RS24055 at 115.082 kb on + strand, within UW163_RS24055 at 115.082 kb on + strand, within UW163_RS24055 at 115.083 kb on - strand, within UW163_RS24055 at 115.115 kb on + strand at 115.115 kb on + strand at 115.124 kb on + strand at 115.125 kb on - strand at 115.235 kb on + strand at 115.235 kb on + strand at 115.235 kb on + strand at 115.235 kb on + strand at 115.364 kb on + strand at 115.429 kb on + strand at 115.429 kb on + strand at 115.429 kb on + strand at 115.438 kb on + strand at 115.523 kb on - strand, within UW163_RS24060 at 115.523 kb on - strand, within UW163_RS24060 at 115.583 kb on + strand, within UW163_RS24060 at 115.583 kb on + strand, within UW163_RS24060 at 115.584 kb on - strand, within UW163_RS24060 at 115.584 kb on - strand, within UW163_RS24060 at 115.605 kb on + strand, within UW163_RS24060 at 115.605 kb on + strand, within UW163_RS24060 at 115.605 kb on + strand, within UW163_RS24060 at 115.605 kb on + strand, within UW163_RS24060 at 115.605 kb on + strand, within UW163_RS24060 at 115.606 kb on - strand, within UW163_RS24060 at 115.606 kb on - strand, within UW163_RS24060 at 115.606 kb on - strand, within UW163_RS24060 at 115.606 kb on - strand, within UW163_RS24060 at 115.606 kb on - strand, within UW163_RS24060 at 115.648 kb on + strand, within UW163_RS24060 at 115.649 kb on - strand, within UW163_RS24060 at 115.649 kb on - strand, within UW163_RS24060 at 115.805 kb on + strand, within UW163_RS24060 at 115.806 kb on - strand, within UW163_RS24060 at 116.180 kb on + strand, within UW163_RS24065 at 116.181 kb on - strand, within UW163_RS24065 at 116.264 kb on + strand, within UW163_RS24065 at 116.264 kb on + strand, within UW163_RS24065 at 116.264 kb on + strand, within UW163_RS24065 at 116.264 kb on + strand, within UW163_RS24065 at 116.264 kb on + strand, within UW163_RS24065 at 116.264 kb on + strand, within UW163_RS24065 at 116.265 kb on - strand, within UW163_RS24065 at 116.265 kb on - strand, within UW163_RS24065 at 116.265 kb on - strand, within UW163_RS24065
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 111,670 + +0.9 111,670 + -0.7 111,670 + -0.5 111,670 + -0.0 111,670 + +0.0 111,670 + +0.7 111,670 + +0.1 111,670 + -0.5 111,781 + -0.3 111,844 - +0.5 111,878 + -0.5 111,879 - +1.4 111,921 + -0.4 111,921 + -0.5 111,922 - +0.1 112,013 + -0.9 112,014 - -0.1 112,014 - +0.0 112,014 - +1.6 112,020 + +0.3 112,020 + -0.1 112,044 + +0.3 112,044 + -0.3 112,044 + +0.0 112,155 + -0.0 112,155 + -0.2 112,155 + -1.3 112,155 + -0.3 112,155 + -0.9 112,155 + -0.5 112,155 + -1.2 112,156 - +0.4 112,156 - -1.2 112,156 - -0.2 112,156 - -0.2 112,156 - -0.4 112,156 - -0.5 112,156 - -0.1 112,156 - +0.1 112,156 - -0.5 112,156 - +1.5 112,156 - +0.9 112,159 + -1.0 112,159 + +1.6 112,159 + -0.2 112,159 + +0.6 112,159 + +0.7 112,160 - -0.5 112,168 + -0.3 112,169 - -1.3 112,178 + -0.3 112,182 + -0.3 112,182 + -0.2 112,183 - +1.0 112,183 - -0.3 112,183 - +0.1 112,186 + +0.2 112,186 + -0.0 112,186 + +0.2 112,186 + -0.2 112,187 - +0.3 112,187 - -0.4 112,187 - -0.1 112,187 - -0.4 112,187 - -0.6 112,266 + +0.3 112,267 - -0.8 112,292 + -0.4 112,292 + +0.0 112,292 + +0.3 112,293 - +0.5 112,293 - -0.4 112,293 - +0.3 112,293 - +0.6 112,293 - -0.4 112,293 - -0.1 112,293 - +0.6 112,293 - -0.5 112,293 - -0.3 112,293 - +0.2 112,293 - +0.5 112,511 - -0.3 112,679 - UW163_RS24055 0.12 -1.0 112,730 + UW163_RS24055 0.14 -0.3 112,730 + UW163_RS24055 0.14 +0.1 112,731 - UW163_RS24055 0.14 +0.2 112,731 - UW163_RS24055 0.14 +0.1 112,731 - UW163_RS24055 0.14 +0.1 112,764 + UW163_RS24055 0.15 +0.7 112,764 + UW163_RS24055 0.15 -0.4 112,764 + UW163_RS24055 0.15 -0.1 112,764 + UW163_RS24055 0.15 -0.3 112,765 - UW163_RS24055 0.15 +0.2 112,765 - UW163_RS24055 0.15 -0.0 112,765 - UW163_RS24055 0.15 -0.1 112,765 - UW163_RS24055 0.15 -0.1 112,919 + UW163_RS24055 0.20 -2.5 112,919 + UW163_RS24055 0.20 +0.4 112,920 - UW163_RS24055 0.20 +1.4 112,928 + UW163_RS24055 0.20 +0.1 112,928 + UW163_RS24055 0.20 -0.5 113,270 + UW163_RS24055 0.31 -1.3 113,270 + UW163_RS24055 0.31 -0.8 113,270 + UW163_RS24055 0.31 -0.7 113,271 - UW163_RS24055 0.31 +0.0 113,271 - UW163_RS24055 0.31 -0.1 113,355 + UW163_RS24055 0.34 +0.3 113,355 + UW163_RS24055 0.34 -0.1 113,356 - UW163_RS24055 0.34 +0.1 113,403 - UW163_RS24055 0.36 -0.8 113,906 + UW163_RS24055 0.52 +0.7 113,906 + UW163_RS24055 0.52 -0.7 113,907 - UW163_RS24055 0.52 -0.3 113,907 - UW163_RS24055 0.52 +0.1 113,907 - UW163_RS24055 0.52 -0.2 113,907 - UW163_RS24055 0.52 +0.1 113,907 - UW163_RS24055 0.52 -0.3 113,907 - UW163_RS24055 0.52 -0.2 113,907 - UW163_RS24055 0.52 -0.3 113,915 + UW163_RS24055 0.52 +0.0 113,915 + UW163_RS24055 0.52 +0.0 113,915 + UW163_RS24055 0.52 +0.5 113,915 + UW163_RS24055 0.52 -0.1 113,915 + UW163_RS24055 0.52 -0.2 113,916 - UW163_RS24055 0.52 +0.1 113,916 - UW163_RS24055 0.52 +0.6 113,965 + UW163_RS24055 0.54 +0.2 113,965 + UW163_RS24055 0.54 +0.1 113,966 - UW163_RS24055 0.54 +0.5 113,966 - UW163_RS24055 0.54 +0.2 114,072 + UW163_RS24055 0.57 +0.2 114,073 + UW163_RS24055 0.57 -1.1 114,073 + UW163_RS24055 0.57 +0.3 114,073 + UW163_RS24055 0.57 +0.6 114,074 - UW163_RS24055 0.57 -0.2 114,074 - UW163_RS24055 0.57 -0.0 114,074 - UW163_RS24055 0.57 +1.1 114,366 + UW163_RS24055 0.67 -0.2 114,366 + UW163_RS24055 0.67 +0.6 114,366 + UW163_RS24055 0.67 -0.9 114,366 + UW163_RS24055 0.67 +0.1 114,366 + UW163_RS24055 0.67 -0.1 114,367 - UW163_RS24055 0.67 +0.9 114,367 - UW163_RS24055 0.67 +0.5 114,367 - UW163_RS24055 0.67 +0.1 114,367 - UW163_RS24055 0.67 -0.5 114,374 + UW163_RS24055 0.67 -0.4 114,375 - UW163_RS24055 0.67 -0.2 114,383 + UW163_RS24055 0.67 +0.6 114,383 + UW163_RS24055 0.67 -0.2 114,383 + UW163_RS24055 0.67 -0.0 114,383 + UW163_RS24055 0.67 -0.3 114,383 + UW163_RS24055 0.67 +0.1 114,383 + UW163_RS24055 0.67 +0.3 114,383 + UW163_RS24055 0.67 -0.4 114,384 - UW163_RS24055 0.67 -0.6 114,384 - UW163_RS24055 0.67 +0.5 114,384 - UW163_RS24055 0.67 +0.1 114,384 - UW163_RS24055 0.67 -0.3 114,384 - UW163_RS24055 0.67 +0.2 114,443 + UW163_RS24055 0.69 +0.5 114,443 + UW163_RS24055 0.69 +0.0 114,443 + UW163_RS24055 0.69 +0.1 114,443 + UW163_RS24055 0.69 -0.3 114,443 + UW163_RS24055 0.69 -0.3 114,444 - UW163_RS24055 0.69 -0.8 114,444 - UW163_RS24055 0.69 +0.4 114,444 - UW163_RS24055 0.69 -1.3 114,452 + UW163_RS24055 0.69 -0.7 114,453 - UW163_RS24055 0.69 -0.4 114,474 + UW163_RS24055 0.70 -0.4 114,476 + UW163_RS24055 0.70 +0.3 114,477 - UW163_RS24055 0.70 -0.0 114,477 - UW163_RS24055 0.70 +1.2 114,477 - UW163_RS24055 0.70 -1.4 114,566 + UW163_RS24055 0.73 +1.0 114,566 + UW163_RS24055 0.73 +0.0 114,566 + UW163_RS24055 0.73 -0.2 114,566 + UW163_RS24055 0.73 +0.2 114,567 - UW163_RS24055 0.73 -0.2 114,567 - UW163_RS24055 0.73 -1.3 114,567 - UW163_RS24055 0.73 +0.1 114,567 - UW163_RS24055 0.73 -0.2 114,644 + UW163_RS24055 0.75 -0.2 114,644 + UW163_RS24055 0.75 -1.6 114,644 + UW163_RS24055 0.75 -0.1 114,644 + UW163_RS24055 0.75 +1.3 114,644 + UW163_RS24055 0.75 -0.3 114,644 + UW163_RS24055 0.75 +1.4 114,645 - UW163_RS24055 0.76 +0.4 114,645 - UW163_RS24055 0.76 -0.6 114,645 - UW163_RS24055 0.76 +0.3 114,645 - UW163_RS24055 0.76 -0.9 114,695 + UW163_RS24055 0.77 +0.1 114,767 + UW163_RS24055 0.79 +0.8 114,768 - UW163_RS24055 0.79 -0.1 114,852 - UW163_RS24055 0.82 -0.1 114,920 + UW163_RS24055 0.84 +1.6 114,921 - UW163_RS24055 0.84 +0.5 114,921 - UW163_RS24055 0.84 -0.2 114,921 - UW163_RS24055 0.84 -1.8 115,082 + UW163_RS24055 0.90 +0.1 115,082 + UW163_RS24055 0.90 +1.4 115,082 + UW163_RS24055 0.90 -0.3 115,083 - UW163_RS24055 0.90 -0.3 115,115 + +0.2 115,115 + -0.2 115,124 + +0.1 115,125 - +0.7 115,235 + +0.2 115,235 + -0.2 115,235 + -0.8 115,235 + +0.2 115,364 + +0.6 115,429 + -0.5 115,429 + -0.4 115,429 + -0.1 115,438 + -0.7 115,523 - UW163_RS24060 0.16 -0.8 115,523 - UW163_RS24060 0.16 -0.6 115,583 + UW163_RS24060 0.25 +0.8 115,583 + UW163_RS24060 0.25 +0.1 115,584 - UW163_RS24060 0.25 -0.2 115,584 - UW163_RS24060 0.25 +0.2 115,605 + UW163_RS24060 0.28 +1.8 115,605 + UW163_RS24060 0.28 -0.3 115,605 + UW163_RS24060 0.28 -0.5 115,605 + UW163_RS24060 0.28 +0.4 115,605 + UW163_RS24060 0.28 +1.2 115,606 - UW163_RS24060 0.28 +0.2 115,606 - UW163_RS24060 0.28 +0.4 115,606 - UW163_RS24060 0.28 -0.5 115,606 - UW163_RS24060 0.28 -0.6 115,606 - UW163_RS24060 0.28 +0.1 115,648 + UW163_RS24060 0.34 -1.4 115,649 - UW163_RS24060 0.35 -0.5 115,649 - UW163_RS24060 0.35 +0.5 115,805 + UW163_RS24060 0.58 -0.5 115,806 - UW163_RS24060 0.58 -0.1 116,180 + UW163_RS24065 0.19 +0.5 116,181 - UW163_RS24065 0.20 +0.4 116,264 + UW163_RS24065 0.43 -0.1 116,264 + UW163_RS24065 0.43 -0.3 116,264 + UW163_RS24065 0.43 -0.0 116,264 + UW163_RS24065 0.43 +0.8 116,264 + UW163_RS24065 0.43 -0.7 116,264 + UW163_RS24065 0.43 +0.2 116,265 - UW163_RS24065 0.43 -0.5 116,265 - UW163_RS24065 0.43 -2.3 116,265 - UW163_RS24065 0.43 -0.1
Or see this region's nucleotide sequence