Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS23720

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS23715 and UW163_RS23720 overlap by 1 nucleotidesUW163_RS23720 and UW163_RS23725 overlap by 4 nucleotides UW163_RS23715: UW163_RS23715 - hypothetical protein, at 22,879 to 24,750 _RS23715 UW163_RS23720: UW163_RS23720 - hypothetical protein, at 24,750 to 25,865 _RS23720 UW163_RS23725: UW163_RS23725 - helicase, at 25,862 to 31,423 _RS23725 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 24.000 kb on - strand, within UW163_RS23715at 24.031 kb on - strand, within UW163_RS23715at 24.047 kb on + strand, within UW163_RS23715at 24.047 kb on + strand, within UW163_RS23715at 24.048 kb on - strand, within UW163_RS23715at 24.048 kb on - strand, within UW163_RS23715at 24.048 kb on - strand, within UW163_RS23715at 24.089 kb on + strand, within UW163_RS23715at 24.241 kb on + strand, within UW163_RS23715at 24.241 kb on + strand, within UW163_RS23715at 24.242 kb on - strand, within UW163_RS23715at 24.242 kb on - strand, within UW163_RS23715at 24.262 kb on - strand, within UW163_RS23715at 24.269 kb on + strand, within UW163_RS23715at 24.270 kb on - strand, within UW163_RS23715at 24.270 kb on - strand, within UW163_RS23715at 24.393 kb on + strand, within UW163_RS23715at 24.394 kb on - strand, within UW163_RS23715at 24.554 kb on + strand, within UW163_RS23715at 24.554 kb on + strand, within UW163_RS23715at 24.554 kb on + strand, within UW163_RS23715at 24.554 kb on + strand, within UW163_RS23715at 24.554 kb on + strand, within UW163_RS23715at 24.554 kb on + strand, within UW163_RS23715at 24.554 kb on + strand, within UW163_RS23715at 24.555 kb on - strand, within UW163_RS23715at 24.555 kb on - strand, within UW163_RS23715at 24.555 kb on - strand, within UW163_RS23715at 24.580 kb on + strandat 24.635 kb on + strandat 24.635 kb on + strandat 24.635 kb on + strandat 24.635 kb on + strandat 24.635 kb on + strandat 24.636 kb on - strandat 24.636 kb on - strandat 24.654 kb on - strandat 24.872 kb on - strand, within UW163_RS23720at 24.885 kb on + strand, within UW163_RS23720at 24.885 kb on + strand, within UW163_RS23720at 24.885 kb on + strand, within UW163_RS23720at 24.885 kb on + strand, within UW163_RS23720at 24.886 kb on - strand, within UW163_RS23720at 24.886 kb on - strand, within UW163_RS23720at 24.886 kb on - strand, within UW163_RS23720at 24.886 kb on - strand, within UW163_RS23720at 24.886 kb on - strand, within UW163_RS23720at 24.886 kb on - strand, within UW163_RS23720at 24.886 kb on - strand, within UW163_RS23720at 24.979 kb on + strand, within UW163_RS23720at 24.980 kb on - strand, within UW163_RS23720at 25.061 kb on + strand, within UW163_RS23720at 25.136 kb on - strand, within UW163_RS23720at 25.366 kb on + strandat 25.366 kb on + strand, within UW163_RS23720at 25.366 kb on + strand, within UW163_RS23720at 25.366 kb on + strand, within UW163_RS23720at 25.366 kb on + strand, within UW163_RS23720at 25.367 kb on - strand, within UW163_RS23720at 25.441 kb on + strand, within UW163_RS23720at 25.442 kb on - strand, within UW163_RS23720at 25.462 kb on + strand, within UW163_RS23720at 25.518 kb on + strand, within UW163_RS23720at 25.518 kb on + strand, within UW163_RS23720at 25.518 kb on + strand, within UW163_RS23720at 25.519 kb on - strand, within UW163_RS23720at 25.519 kb on - strand, within UW163_RS23720at 25.519 kb on - strand, within UW163_RS23720at 25.519 kb on - strand, within UW163_RS23720at 25.899 kb on + strandat 25.899 kb on + strandat 25.900 kb on - strandat 25.900 kb on - strandat 25.940 kb on + strandat 25.944 kb on + strandat 25.944 kb on + strandat 25.944 kb on + strandat 25.944 kb on + strandat 25.944 kb on + strandat 25.945 kb on - strandat 25.945 kb on - strandat 25.945 kb on - strandat 25.945 kb on - strandat 25.945 kb on - strandat 25.945 kb on - strandat 25.945 kb on - strandat 25.945 kb on - strandat 25.945 kb on - strandat 25.955 kb on + strandat 25.955 kb on + strandat 25.955 kb on + strandat 25.956 kb on - strandat 25.956 kb on - strandat 26.033 kb on + strandat 26.033 kb on + strandat 26.034 kb on - strandat 26.034 kb on - strandat 26.034 kb on - strandat 26.054 kb on + strandat 26.054 kb on + strandat 26.073 kb on - strandat 26.073 kb on - strandat 26.145 kb on - strandat 26.145 kb on - strandat 26.156 kb on + strandat 26.157 kb on - strandat 26.190 kb on + strandat 26.190 kb on + strandat 26.191 kb on - strandat 26.191 kb on - strandat 26.191 kb on - strandat 26.456 kb on - strand, within UW163_RS23725at 26.459 kb on + strand, within UW163_RS23725at 26.459 kb on + strand, within UW163_RS23725at 26.460 kb on - strand, within UW163_RS23725at 26.460 kb on - strand, within UW163_RS23725at 26.460 kb on - strand, within UW163_RS23725at 26.460 kb on - strand, within UW163_RS23725at 26.460 kb on - strand, within UW163_RS23725at 26.497 kb on + strand, within UW163_RS23725at 26.498 kb on - strand, within UW163_RS23725at 26.534 kb on - strandat 26.541 kb on - strand, within UW163_RS23725at 26.541 kb on - strandat 26.541 kb on - strand, within UW163_RS23725at 26.541 kb on - strand, within UW163_RS23725at 26.541 kb on - strand, within UW163_RS23725at 26.613 kb on + strand, within UW163_RS23725at 26.613 kb on + strand, within UW163_RS23725at 26.613 kb on + strand, within UW163_RS23725at 26.613 kb on + strand, within UW163_RS23725at 26.613 kb on + strand, within UW163_RS23725at 26.613 kb on + strand, within UW163_RS23725at 26.614 kb on - strand, within UW163_RS23725at 26.614 kb on - strand, within UW163_RS23725at 26.614 kb on - strand, within UW163_RS23725at 26.614 kb on - strand, within UW163_RS23725at 26.614 kb on - strandat 26.614 kb on - strand, within UW163_RS23725at 26.624 kb on + strand, within UW163_RS23725at 26.624 kb on + strand, within UW163_RS23725at 26.792 kb on + strand, within UW163_RS23725at 26.792 kb on + strand, within UW163_RS23725at 26.792 kb on + strand, within UW163_RS23725at 26.793 kb on - strand, within UW163_RS23725at 26.793 kb on - strand, within UW163_RS23725at 26.807 kb on + strandat 26.807 kb on + strand, within UW163_RS23725at 26.808 kb on - strand, within UW163_RS23725at 26.808 kb on - strand, within UW163_RS23725at 26.808 kb on - strand, within UW163_RS23725at 26.808 kb on - strand, within UW163_RS23725at 26.808 kb on - strand, within UW163_RS23725at 26.808 kb on - strand, within UW163_RS23725

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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24,000 - UW163_RS23715 0.60 -0.7
24,031 - UW163_RS23715 0.62 -0.6
24,047 + UW163_RS23715 0.62 -0.3
24,047 + UW163_RS23715 0.62 +0.1
24,048 - UW163_RS23715 0.62 -0.4
24,048 - UW163_RS23715 0.62 -0.1
24,048 - UW163_RS23715 0.62 -1.3
24,089 + UW163_RS23715 0.65 -0.9
24,241 + UW163_RS23715 0.73 +0.5
24,241 + UW163_RS23715 0.73 -0.6
24,242 - UW163_RS23715 0.73 -0.5
24,242 - UW163_RS23715 0.73 +0.3
24,262 - UW163_RS23715 0.74 -0.4
24,269 + UW163_RS23715 0.74 -0.0
24,270 - UW163_RS23715 0.74 -0.5
24,270 - UW163_RS23715 0.74 -0.5
24,393 + UW163_RS23715 0.81 +0.5
24,394 - UW163_RS23715 0.81 -0.5
24,554 + UW163_RS23715 0.89 -0.0
24,554 + UW163_RS23715 0.89 +0.1
24,554 + UW163_RS23715 0.89 +0.4
24,554 + UW163_RS23715 0.89 +1.0
24,554 + UW163_RS23715 0.89 +0.1
24,554 + UW163_RS23715 0.89 -0.2
24,554 + UW163_RS23715 0.89 +0.4
24,555 - UW163_RS23715 0.90 +0.0
24,555 - UW163_RS23715 0.90 -0.3
24,555 - UW163_RS23715 0.90 +1.1
24,580 + -0.1
24,635 + -0.2
24,635 + -0.2
24,635 + -1.0
24,635 + -0.1
24,635 + -0.1
24,636 - -0.5
24,636 - -0.6
24,654 - +0.3
24,872 - UW163_RS23720 0.11 +0.5
24,885 + UW163_RS23720 0.12 +1.3
24,885 + UW163_RS23720 0.12 -0.3
24,885 + UW163_RS23720 0.12 -1.0
24,885 + UW163_RS23720 0.12 -0.5
24,886 - UW163_RS23720 0.12 -0.1
24,886 - UW163_RS23720 0.12 +0.0
24,886 - UW163_RS23720 0.12 +0.5
24,886 - UW163_RS23720 0.12 -1.8
24,886 - UW163_RS23720 0.12 -0.8
24,886 - UW163_RS23720 0.12 -0.4
24,886 - UW163_RS23720 0.12 +0.4
24,979 + UW163_RS23720 0.21 +0.2
24,980 - UW163_RS23720 0.21 -0.3
25,061 + UW163_RS23720 0.28 +0.3
25,136 - UW163_RS23720 0.35 -0.2
25,366 + +1.4
25,366 + UW163_RS23720 0.55 -0.6
25,366 + UW163_RS23720 0.55 -0.5
25,366 + UW163_RS23720 0.55 +0.5
25,366 + UW163_RS23720 0.55 -0.1
25,367 - UW163_RS23720 0.55 -0.3
25,441 + UW163_RS23720 0.62 -0.0
25,442 - UW163_RS23720 0.62 -0.3
25,462 + UW163_RS23720 0.64 -0.8
25,518 + UW163_RS23720 0.69 -0.3
25,518 + UW163_RS23720 0.69 -0.6
25,518 + UW163_RS23720 0.69 -0.1
25,519 - UW163_RS23720 0.69 +0.1
25,519 - UW163_RS23720 0.69 +1.2
25,519 - UW163_RS23720 0.69 +0.6
25,519 - UW163_RS23720 0.69 -0.0
25,899 + +0.2
25,899 + +0.1
25,900 - -0.0
25,900 - -2.7
25,940 + +0.2
25,944 + -0.0
25,944 + +1.1
25,944 + -0.6
25,944 + +0.5
25,944 + -0.4
25,945 - -0.7
25,945 - -0.2
25,945 - -1.5
25,945 - -0.3
25,945 - +0.5
25,945 - -0.8
25,945 - +0.8
25,945 - -0.6
25,945 - +0.4
25,955 + -0.1
25,955 + +0.1
25,955 + +0.0
25,956 - +1.1
25,956 - -0.0
26,033 + -0.1
26,033 + +1.0
26,034 - +0.3
26,034 - -0.5
26,034 - +0.0
26,054 + +0.2
26,054 + -0.4
26,073 - -0.4
26,073 - -0.7
26,145 - +2.4
26,145 - -0.1
26,156 + +0.9
26,157 - +0.2
26,190 + +0.1
26,190 + -0.7
26,191 - +0.1
26,191 - -0.5
26,191 - -0.2
26,456 - UW163_RS23725 0.11 -0.7
26,459 + UW163_RS23725 0.11 +0.0
26,459 + UW163_RS23725 0.11 -1.1
26,460 - UW163_RS23725 0.11 -0.1
26,460 - UW163_RS23725 0.11 -0.1
26,460 - UW163_RS23725 0.11 -0.2
26,460 - UW163_RS23725 0.11 -0.3
26,460 - UW163_RS23725 0.11 +0.5
26,497 + UW163_RS23725 0.11 -0.7
26,498 - UW163_RS23725 0.11 +0.0
26,534 - +2.4
26,541 - UW163_RS23725 0.12 -0.6
26,541 - +0.4
26,541 - UW163_RS23725 0.12 -0.1
26,541 - UW163_RS23725 0.12 -0.1
26,541 - UW163_RS23725 0.12 +0.1
26,613 + UW163_RS23725 0.14 -0.2
26,613 + UW163_RS23725 0.14 -0.9
26,613 + UW163_RS23725 0.14 -0.3
26,613 + UW163_RS23725 0.14 -0.3
26,613 + UW163_RS23725 0.14 -0.5
26,613 + UW163_RS23725 0.14 -0.2
26,614 - UW163_RS23725 0.14 +0.1
26,614 - UW163_RS23725 0.14 -0.2
26,614 - UW163_RS23725 0.14 +1.1
26,614 - UW163_RS23725 0.14 -0.1
26,614 - +1.4
26,614 - UW163_RS23725 0.14 +0.3
26,624 + UW163_RS23725 0.14 -0.2
26,624 + UW163_RS23725 0.14 -0.8
26,792 + UW163_RS23725 0.17 -0.0
26,792 + UW163_RS23725 0.17 -1.1
26,792 + UW163_RS23725 0.17 +0.2
26,793 - UW163_RS23725 0.17 +1.0
26,793 - UW163_RS23725 0.17 -0.6
26,807 + +1.1
26,807 + UW163_RS23725 0.17 -0.9
26,808 - UW163_RS23725 0.17 -0.3
26,808 - UW163_RS23725 0.17 -0.4
26,808 - UW163_RS23725 0.17 -0.8
26,808 - UW163_RS23725 0.17 +0.3
26,808 - UW163_RS23725 0.17 -0.2
26,808 - UW163_RS23725 0.17 -0.8

Or see this region's nucleotide sequence