Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS23230

Experiment: CPG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CPG
1,843,920	+		UW163_RS23225	0.72	+0.1
1,843,921	-		UW163_RS23225	0.72	-0.2
1,844,052	+				+1.9
1,844,052	+		UW163_RS23225	0.76	+0.7
1,844,052	+		UW163_RS23225	0.76	-1.1
1,844,052	+		UW163_RS23225	0.76	-0.1
1,844,053	-		UW163_RS23225	0.76	-0.2
1,844,103	+		UW163_RS23225	0.78	-1.4
1,844,103	+		UW163_RS23225	0.78	-0.1
1,844,103	+		UW163_RS23225	0.78	+0.0
1,844,104	-		UW163_RS23225	0.78	+0.2
1,844,184	+		UW163_RS23225	0.81	-0.1
1,844,185	-		UW163_RS23225	0.81	+0.4
1,844,185	-		UW163_RS23225	0.81	-0.2
1,844,331	+		UW163_RS23225	0.86	-0.2
1,844,332	-		UW163_RS23225	0.86	-0.4
1,844,370	+		UW163_RS23225	0.87	-0.9
1,844,371	-		UW163_RS23225	0.87	-1.6
1,844,371	-		UW163_RS23225	0.87	+0.5
1,844,371	-		UW163_RS23225	0.87	-0.4
1,844,373	+		UW163_RS23225	0.87	-1.5
1,844,373	+		UW163_RS23225	0.87	-0.3
1,844,373	+		UW163_RS23225	0.87	-0.4
1,844,374	-		UW163_RS23225	0.87	-1.7
1,844,476	+				+0.6
1,844,477	-				+0.4
1,844,592	+				-0.0
1,844,592	+				+1.6
1,844,593	-				-0.2
1,844,662	-				+0.2
1,844,662	-				-2.5
1,844,662	-				-1.0
1,844,696	+				+0.1
1,844,697	-				+0.4
1,844,792	+				-1.3
1,844,793	-				-0.5
1,844,793	-				-1.1
1,844,793	-				-0.4
1,844,793	-				-1.0
1,844,794	+				-0.7
1,844,794	+				-0.2
1,844,794	+				-0.3
1,844,794	+				-1.0
1,844,794	+				-0.8
1,844,794	+				-0.1
1,844,794	+				-0.5
1,844,794	+				-0.0
1,844,795	-				-0.1
1,844,795	-				-0.3
1,844,795	-				-1.3
1,844,795	-				+0.0
1,844,795	-				+0.3
1,844,795	-				+0.0
1,844,795	-				+0.4
1,844,795	-				-0.1
1,844,795	-				+0.4
1,844,795	-				-0.1
1,844,795	-				-0.0
1,844,807	+				+0.3
1,844,816	+				-0.2
1,844,816	+				-0.3
1,844,817	-				-2.2
1,844,817	-				-0.5
1,844,817	-				+0.1
1,844,817	-				-0.0
1,844,822	-				-0.7
1,844,822	-				-1.2
1,844,832	+				-0.7
1,844,832	+				-0.5
1,844,833	+				-0.5
1,844,833	+				+0.1
1,844,833	+				+0.5
1,844,833	+				+0.6
1,844,833	+				-2.0
1,844,833	+				-0.8
1,844,833	+				-0.7
1,844,833	+				+0.1
1,844,833	+				-0.1
1,844,834	-				+0.6
1,844,834	-				+2.7
1,844,834	-				-0.8
1,844,834	-				-0.2
1,844,834	-				-0.8
1,844,834	-				-1.0
1,844,834	-				+0.0
1,844,843	+				+0.1
1,844,844	+				+0.1
1,844,844	+				-0.1
1,844,845	-				+0.5
1,844,845	-				+1.2
1,844,845	-				-0.2
1,844,845	-				-0.3
1,844,845	-				+3.3
1,844,846	+				+0.2
1,844,847	-				-0.2
1,844,888	+		UW163_RS23230	0.17	-0.5
1,845,058	+		UW163_RS23230	0.50	+0.2
1,845,058	+		UW163_RS23230	0.50	-0.5
1,845,058	+		UW163_RS23230	0.50	+0.5
1,845,059	-		UW163_RS23230	0.50	+0.0
1,845,059	-		UW163_RS23230	0.50	-0.2
1,845,059	-		UW163_RS23230	0.50	-0.7
1,845,059	-		UW163_RS23230	0.50	-0.6
1,845,059	-		UW163_RS23230	0.50	-0.5
1,845,245	+		UW163_RS23230	0.86	-0.9
1,845,245	+		UW163_RS23230	0.86	-0.3
1,845,245	+		UW163_RS23230	0.86	-0.1
1,845,245	+		UW163_RS23230	0.86	+0.2
1,845,245	+		UW163_RS23230	0.86	-0.3
1,845,246	-		UW163_RS23230	0.86	+0.2
1,845,246	-		UW163_RS23230	0.86	-0.8
1,845,246	-		UW163_RS23230	0.86	+1.0
1,845,330	-				-0.7
1,845,330	-				-0.1
1,845,330	-				-0.6
1,845,343	+				+1.1
1,845,344	-				-0.3
1,845,344	-				+0.4
1,845,344	-				+0.3
1,845,344	-				-0.2
1,845,391	+				+1.6
1,845,391	+				-1.5
1,845,391	+				+1.1
1,845,392	-				-0.1
1,845,535	+		UW163_RS23235	0.16	-0.8
1,845,535	+		UW163_RS23235	0.16	-1.0
1,845,535	+		UW163_RS23235	0.16	-0.1
1,845,535	+		UW163_RS23235	0.16	+0.5
1,845,535	+		UW163_RS23235	0.16	+0.0
1,845,535	+		UW163_RS23235	0.16	+0.4
1,845,535	+		UW163_RS23235	0.16	-0.6
1,845,535	+		UW163_RS23235	0.16	+0.2
1,845,535	+		UW163_RS23235	0.16	-0.4
1,845,535	+		UW163_RS23235	0.16	+0.2
1,845,535	+		UW163_RS23235	0.16	-0.4
1,845,535	+		UW163_RS23235	0.16	-0.1
1,845,535	+		UW163_RS23235	0.16	-0.2
1,845,535	+		UW163_RS23235	0.16	-0.0
1,845,536	-		UW163_RS23235	0.16	-0.7
1,845,536	-		UW163_RS23235	0.16	-0.7
1,845,536	-		UW163_RS23235	0.16	-1.8
1,845,536	-		UW163_RS23235	0.16	-1.8
1,845,536	-		UW163_RS23235	0.16	+0.4
1,845,536	-		UW163_RS23235	0.16	+0.3
1,845,536	-		UW163_RS23235	0.16	-0.6
1,845,536	-		UW163_RS23235	0.16	-0.7
1,845,536	-		UW163_RS23235	0.16	-0.3
1,845,536	-		UW163_RS23235	0.16	-1.7
1,845,536	-		UW163_RS23235	0.16	+0.2
1,845,536	-		UW163_RS23235	0.16	-0.3
1,845,592	+		UW163_RS23235	0.41	-0.3
1,845,592	+		UW163_RS23235	0.41	-0.9
1,845,592	+				+1.3
1,845,592	+		UW163_RS23235	0.41	-0.3
1,845,593	-		UW163_RS23235	0.41	-0.2
1,845,593	-		UW163_RS23235	0.41	-0.5
1,845,613	+		UW163_RS23235	0.50	-0.2
1,845,613	+		UW163_RS23235	0.50	+1.2
1,845,613	+		UW163_RS23235	0.50	-0.1
1,845,613	+		UW163_RS23235	0.50	+0.1
1,845,614	-		UW163_RS23235	0.50	+0.2
1,845,614	-		UW163_RS23235	0.50	-0.1
1,845,614	-		UW163_RS23235	0.50	+1.6
1,845,614	-		UW163_RS23235	0.50	+0.1
1,845,614	-		UW163_RS23235	0.50	-0.5
1,845,622	+		UW163_RS23235	0.54	-0.6
1,845,622	+		UW163_RS23235	0.54	+0.7
1,845,622	+		UW163_RS23235	0.54	+0.4
1,845,623	-		UW163_RS23235	0.54	-0.1
1,845,777	+		UW163_RS23240	0.11	-1.6
1,845,777	+		UW163_RS23240	0.11	-0.5
1,845,778	-		UW163_RS23240	0.11	+0.2
1,845,778	-		UW163_RS23240	0.11	-0.4
1,845,778	-		UW163_RS23240	0.11	-0.0
1,845,861	+		UW163_RS23240	0.28	+0.9
1,845,861	+		UW163_RS23240	0.28	-0.3
1,846,032	+		UW163_RS23240	0.62	+0.3
1,846,032	+		UW163_RS23240	0.62	-0.2
1,846,032	+		UW163_RS23240	0.62	-0.9
1,846,032	+		UW163_RS23240	0.62	-0.9
1,846,033	-		UW163_RS23240	0.63	-0.5
1,846,033	-		UW163_RS23240	0.63	+0.3
1,846,033	-		UW163_RS23240	0.63	-0.0
1,846,146	+		UW163_RS23240	0.85	-0.4
1,846,147	-		UW163_RS23240	0.86	-0.2
1,846,147	-		UW163_RS23240	0.86	-0.3
1,846,291	+				-0.6
1,846,292	-				-1.1
1,846,313	+				-0.3
1,846,314	-				+0.2