Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS22760

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS22750 and UW163_RS22755 are separated by 103 nucleotidesUW163_RS22755 and UW163_RS22760 are separated by 14 nucleotidesUW163_RS22760 and UW163_RS22765 are separated by 216 nucleotides UW163_RS22750: UW163_RS22750 - PadR family transcriptional regulator, at 1,708,378 to 1,709,034 _RS22750 UW163_RS22755: UW163_RS22755 - siderophore-interacting protein, at 1,709,138 to 1,709,971 _RS22755 UW163_RS22760: UW163_RS22760 - hypothetical protein, at 1,709,986 to 1,710,240 _RS22760 UW163_RS22765: UW163_RS22765 - methyl-accepting chemotaxis protein, at 1,710,457 to 1,712,046 _RS22765 Position (kb) 1709 1710 1711Strain fitness (log2 ratio) -1 0 1at 1709.382 kb on - strand, within UW163_RS22755at 1709.382 kb on - strand, within UW163_RS22755at 1709.383 kb on + strand, within UW163_RS22755at 1709.383 kb on + strand, within UW163_RS22755at 1709.384 kb on - strand, within UW163_RS22755at 1709.384 kb on - strand, within UW163_RS22755at 1709.384 kb on - strand, within UW163_RS22755at 1709.384 kb on - strand, within UW163_RS22755at 1709.385 kb on - strand, within UW163_RS22755at 1709.694 kb on + strand, within UW163_RS22755at 1709.695 kb on - strand, within UW163_RS22755at 1709.695 kb on - strand, within UW163_RS22755at 1709.695 kb on - strand, within UW163_RS22755at 1709.987 kb on + strandat 1710.053 kb on + strand, within UW163_RS22760at 1710.053 kb on + strand, within UW163_RS22760at 1710.054 kb on - strand, within UW163_RS22760at 1710.054 kb on - strand, within UW163_RS22760at 1710.054 kb on - strand, within UW163_RS22760at 1710.054 kb on - strand, within UW163_RS22760at 1710.470 kb on + strandat 1710.471 kb on - strandat 1710.511 kb on + strandat 1710.512 kb on - strandat 1710.733 kb on + strand, within UW163_RS22765at 1710.844 kb on + strand, within UW163_RS22765at 1710.844 kb on + strand, within UW163_RS22765at 1710.844 kb on + strand, within UW163_RS22765at 1710.844 kb on + strand, within UW163_RS22765at 1710.845 kb on - strand, within UW163_RS22765at 1710.845 kb on - strand, within UW163_RS22765at 1710.874 kb on + strand, within UW163_RS22765at 1710.874 kb on + strand, within UW163_RS22765at 1710.875 kb on - strand, within UW163_RS22765

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,709,382 - UW163_RS22755 0.29 -0.1
1,709,382 - UW163_RS22755 0.29 -0.3
1,709,383 + UW163_RS22755 0.29 +0.0
1,709,383 + UW163_RS22755 0.29 -0.7
1,709,384 - UW163_RS22755 0.29 +0.2
1,709,384 - UW163_RS22755 0.29 -0.6
1,709,384 - UW163_RS22755 0.29 -1.0
1,709,384 - UW163_RS22755 0.29 -0.0
1,709,385 - UW163_RS22755 0.30 -0.2
1,709,694 + UW163_RS22755 0.67 -1.3
1,709,695 - UW163_RS22755 0.67 -0.0
1,709,695 - UW163_RS22755 0.67 -0.1
1,709,695 - UW163_RS22755 0.67 -0.4
1,709,987 + -0.8
1,710,053 + UW163_RS22760 0.26 +0.5
1,710,053 + UW163_RS22760 0.26 -0.6
1,710,054 - UW163_RS22760 0.27 +0.4
1,710,054 - UW163_RS22760 0.27 -0.3
1,710,054 - UW163_RS22760 0.27 +1.0
1,710,054 - UW163_RS22760 0.27 -0.8
1,710,470 + +0.7
1,710,471 - +0.2
1,710,511 + +0.3
1,710,512 - +0.1
1,710,733 + UW163_RS22765 0.17 +0.4
1,710,844 + UW163_RS22765 0.24 +0.1
1,710,844 + UW163_RS22765 0.24 +0.1
1,710,844 + UW163_RS22765 0.24 -0.0
1,710,844 + UW163_RS22765 0.24 -0.4
1,710,845 - UW163_RS22765 0.24 +0.5
1,710,845 - UW163_RS22765 0.24 -0.7
1,710,874 + UW163_RS22765 0.26 -0.1
1,710,874 + UW163_RS22765 0.26 -1.3
1,710,875 - UW163_RS22765 0.26 +0.5

Or see this region's nucleotide sequence