Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS18030

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS18020 and UW163_RS18025 are separated by 204 nucleotidesUW163_RS18025 and UW163_RS18030 are separated by 44 nucleotidesUW163_RS18030 and UW163_RS18035 are separated by 119 nucleotides UW163_RS18020: UW163_RS18020 - GGDEF domain-containing protein, at 439,271 to 440,674 _RS18020 UW163_RS18025: UW163_RS18025 - DUF488 domain-containing protein, at 440,879 to 441,277 _RS18025 UW163_RS18030: UW163_RS18030 - ABC transporter substrate-binding protein, at 441,322 to 442,362 _RS18030 UW163_RS18035: UW163_RS18035 - ABC transporter permease, at 442,482 to 443,378 _RS18035 Position (kb) 441 442 443Strain fitness (log2 ratio) -1 0 1 2at 440.335 kb on + strand, within UW163_RS18020at 440.335 kb on + strand, within UW163_RS18020at 440.335 kb on + strandat 440.335 kb on + strand, within UW163_RS18020at 440.335 kb on + strand, within UW163_RS18020at 440.335 kb on + strand, within UW163_RS18020at 440.336 kb on - strand, within UW163_RS18020at 440.336 kb on - strand, within UW163_RS18020at 440.336 kb on - strand, within UW163_RS18020at 440.336 kb on - strand, within UW163_RS18020at 440.376 kb on + strand, within UW163_RS18020at 440.377 kb on - strand, within UW163_RS18020at 440.417 kb on + strand, within UW163_RS18020at 440.417 kb on + strand, within UW163_RS18020at 440.417 kb on + strand, within UW163_RS18020at 440.418 kb on - strand, within UW163_RS18020at 440.460 kb on + strand, within UW163_RS18020at 440.460 kb on + strand, within UW163_RS18020at 440.553 kb on + strandat 440.554 kb on - strandat 440.554 kb on - strandat 440.554 kb on - strandat 440.554 kb on - strandat 440.554 kb on - strandat 440.554 kb on - strandat 440.556 kb on - strandat 440.559 kb on + strandat 440.560 kb on - strandat 440.560 kb on - strandat 440.560 kb on - strandat 440.571 kb on + strandat 440.572 kb on - strandat 440.572 kb on - strandat 440.572 kb on - strandat 440.613 kb on + strandat 440.614 kb on - strandat 440.614 kb on - strandat 440.614 kb on - strandat 440.621 kb on - strandat 440.680 kb on - strandat 440.696 kb on + strandat 440.696 kb on + strandat 440.696 kb on + strandat 440.696 kb on + strandat 440.696 kb on + strandat 440.696 kb on + strandat 440.696 kb on + strandat 440.697 kb on - strandat 440.697 kb on - strandat 440.697 kb on - strandat 440.697 kb on - strandat 440.697 kb on - strandat 440.697 kb on - strandat 440.713 kb on - strandat 440.714 kb on + strandat 440.714 kb on + strandat 440.715 kb on - strandat 440.715 kb on - strandat 440.715 kb on - strandat 440.715 kb on - strandat 440.715 kb on - strandat 440.725 kb on - strandat 440.958 kb on + strand, within UW163_RS18025at 440.958 kb on + strand, within UW163_RS18025at 440.958 kb on + strand, within UW163_RS18025at 440.958 kb on + strand, within UW163_RS18025at 441.269 kb on + strandat 441.270 kb on - strandat 441.270 kb on - strandat 441.324 kb on - strandat 441.522 kb on - strand, within UW163_RS18030at 441.522 kb on - strand, within UW163_RS18030at 441.522 kb on - strand, within UW163_RS18030at 441.522 kb on - strand, within UW163_RS18030at 441.618 kb on - strand, within UW163_RS18030at 441.635 kb on + strand, within UW163_RS18030at 441.635 kb on + strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.636 kb on - strand, within UW163_RS18030at 441.664 kb on + strand, within UW163_RS18030at 441.716 kb on + strand, within UW163_RS18030at 441.717 kb on - strand, within UW163_RS18030at 441.772 kb on + strand, within UW163_RS18030at 441.827 kb on + strand, within UW163_RS18030at 441.827 kb on + strand, within UW163_RS18030at 441.828 kb on - strand, within UW163_RS18030at 441.828 kb on - strand, within UW163_RS18030at 441.828 kb on - strand, within UW163_RS18030at 441.828 kb on - strand, within UW163_RS18030at 441.968 kb on + strand, within UW163_RS18030at 441.968 kb on + strandat 441.969 kb on - strand, within UW163_RS18030at 442.621 kb on + strand, within UW163_RS18035at 442.621 kb on + strand, within UW163_RS18035at 442.621 kb on + strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.622 kb on - strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.627 kb on + strand, within UW163_RS18035at 442.628 kb on - strand, within UW163_RS18035at 442.628 kb on - strand, within UW163_RS18035at 442.768 kb on + strand, within UW163_RS18035at 442.768 kb on + strand, within UW163_RS18035at 442.768 kb on + strand, within UW163_RS18035at 442.769 kb on - strand, within UW163_RS18035at 442.789 kb on + strand, within UW163_RS18035at 442.872 kb on - strand, within UW163_RS18035at 443.054 kb on - strand, within UW163_RS18035

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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440,335 + UW163_RS18020 0.76 -0.2
440,335 + UW163_RS18020 0.76 -0.8
440,335 + +1.4
440,335 + UW163_RS18020 0.76 -1.4
440,335 + UW163_RS18020 0.76 -0.6
440,335 + UW163_RS18020 0.76 -0.8
440,336 - UW163_RS18020 0.76 -0.4
440,336 - UW163_RS18020 0.76 +0.1
440,336 - UW163_RS18020 0.76 +0.1
440,336 - UW163_RS18020 0.76 +0.2
440,376 + UW163_RS18020 0.79 -1.5
440,377 - UW163_RS18020 0.79 +1.2
440,417 + UW163_RS18020 0.82 +0.3
440,417 + UW163_RS18020 0.82 -0.1
440,417 + UW163_RS18020 0.82 +0.0
440,418 - UW163_RS18020 0.82 +0.1
440,460 + UW163_RS18020 0.85 +0.0
440,460 + UW163_RS18020 0.85 +0.1
440,553 + -0.6
440,554 - +0.9
440,554 - +0.5
440,554 - -0.1
440,554 - +1.4
440,554 - -1.3
440,554 - -0.4
440,556 - -0.7
440,559 + -0.6
440,560 - -1.3
440,560 - -0.5
440,560 - +0.2
440,571 + -0.2
440,572 - -0.3
440,572 - +0.1
440,572 - -0.1
440,613 + -0.3
440,614 - +0.9
440,614 - -0.4
440,614 - -1.2
440,621 - +0.1
440,680 - +1.4
440,696 + -0.5
440,696 + -0.9
440,696 + +0.3
440,696 + -0.3
440,696 + +0.2
440,696 + -0.1
440,696 + +0.2
440,697 - +0.8
440,697 - +1.0
440,697 - -0.4
440,697 - -0.9
440,697 - -0.5
440,697 - +0.3
440,713 - -0.2
440,714 + -1.0
440,714 + -0.0
440,715 - +0.7
440,715 - +0.1
440,715 - -0.7
440,715 - -0.5
440,715 - -0.7
440,725 - +1.9
440,958 + UW163_RS18025 0.20 -0.1
440,958 + UW163_RS18025 0.20 -0.8
440,958 + UW163_RS18025 0.20 +0.2
440,958 + UW163_RS18025 0.20 +0.3
441,269 + -1.3
441,270 - -0.6
441,270 - +1.0
441,324 - -0.6
441,522 - UW163_RS18030 0.19 -0.8
441,522 - UW163_RS18030 0.19 +0.4
441,522 - UW163_RS18030 0.19 -0.0
441,522 - UW163_RS18030 0.19 -0.3
441,618 - UW163_RS18030 0.28 -0.9
441,635 + UW163_RS18030 0.30 -0.4
441,635 + UW163_RS18030 0.30 -0.4
441,636 - UW163_RS18030 0.30 -1.2
441,636 - UW163_RS18030 0.30 -0.7
441,636 - UW163_RS18030 0.30 +0.0
441,636 - UW163_RS18030 0.30 -0.3
441,636 - UW163_RS18030 0.30 -0.3
441,636 - UW163_RS18030 0.30 -1.4
441,664 + UW163_RS18030 0.33 -0.5
441,716 + UW163_RS18030 0.38 -1.6
441,717 - UW163_RS18030 0.38 -0.7
441,772 + UW163_RS18030 0.43 -0.5
441,827 + UW163_RS18030 0.49 +0.4
441,827 + UW163_RS18030 0.49 -0.3
441,828 - UW163_RS18030 0.49 -0.3
441,828 - UW163_RS18030 0.49 +0.2
441,828 - UW163_RS18030 0.49 +0.7
441,828 - UW163_RS18030 0.49 -0.6
441,968 + UW163_RS18030 0.62 -0.1
441,968 + +0.8
441,969 - UW163_RS18030 0.62 +0.1
442,621 + UW163_RS18035 0.15 -0.2
442,621 + UW163_RS18035 0.15 +0.1
442,621 + UW163_RS18035 0.15 -0.2
442,622 - UW163_RS18035 0.16 -1.0
442,622 - UW163_RS18035 0.16 +0.0
442,622 - UW163_RS18035 0.16 -0.3
442,622 - UW163_RS18035 0.16 +0.5
442,622 - UW163_RS18035 0.16 -1.6
442,622 - UW163_RS18035 0.16 -0.0
442,627 + UW163_RS18035 0.16 -1.1
442,627 + UW163_RS18035 0.16 +0.6
442,627 + UW163_RS18035 0.16 -1.2
442,627 + UW163_RS18035 0.16 -0.1
442,627 + UW163_RS18035 0.16 +0.7
442,627 + UW163_RS18035 0.16 -0.4
442,628 - UW163_RS18035 0.16 -0.2
442,628 - UW163_RS18035 0.16 -0.9
442,768 + UW163_RS18035 0.32 +0.1
442,768 + UW163_RS18035 0.32 -0.1
442,768 + UW163_RS18035 0.32 +0.5
442,769 - UW163_RS18035 0.32 +0.4
442,789 + UW163_RS18035 0.34 +0.1
442,872 - UW163_RS18035 0.43 +0.4
443,054 - UW163_RS18035 0.64 +0.1

Or see this region's nucleotide sequence