Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS24940 and UW163_RS24945 overlap by 7 nucleotides UW163_RS24945 and UW163_RS17860 are separated by 155 nucleotides UW163_RS17860 and UW163_RS17865 are separated by 14 nucleotides
UW163_RS24940: UW163_RS24940 - IS5/IS1182 family transposase, at 391,781 to 392,586
_RS24940
UW163_RS24945: UW163_RS24945 - DUF4265 domain-containing protein, at 392,580 to 392,909
_RS24945
UW163_RS17860: UW163_RS17860 - hemagglutinin, at 393,065 to 395,605
_RS17860
UW163_RS17865: UW163_RS17865 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 395,620 to 397,377
_RS17865
Position (kb) 393
394
395
396 Strain fitness (log2 ratio) -1
0
1 at 392.750 kb on - strand, within UW163_RS24945 at 392.750 kb on - strand, within UW163_RS24945 at 392.756 kb on + strand, within UW163_RS24945 at 392.756 kb on + strand, within UW163_RS24945 at 392.757 kb on - strand, within UW163_RS24945 at 392.757 kb on - strand, within UW163_RS24945 at 392.757 kb on - strand, within UW163_RS24945 at 392.760 kb on + strand, within UW163_RS24945 at 392.760 kb on + strand, within UW163_RS24945 at 392.760 kb on + strand, within UW163_RS24945 at 392.761 kb on - strand, within UW163_RS24945 at 392.761 kb on - strand, within UW163_RS24945 at 392.783 kb on + strand, within UW163_RS24945 at 392.783 kb on + strand, within UW163_RS24945 at 392.784 kb on - strand, within UW163_RS24945 at 392.784 kb on - strand, within UW163_RS24945 at 392.787 kb on + strand, within UW163_RS24945 at 392.788 kb on - strand, within UW163_RS24945 at 392.788 kb on - strand, within UW163_RS24945 at 392.788 kb on - strand, within UW163_RS24945 at 392.788 kb on - strand, within UW163_RS24945 at 392.789 kb on + strand, within UW163_RS24945 at 392.789 kb on + strand, within UW163_RS24945 at 392.790 kb on - strand, within UW163_RS24945 at 392.790 kb on - strand, within UW163_RS24945 at 392.790 kb on - strand, within UW163_RS24945 at 392.794 kb on - strand, within UW163_RS24945 at 392.824 kb on + strand, within UW163_RS24945 at 392.824 kb on + strand, within UW163_RS24945 at 392.825 kb on - strand, within UW163_RS24945 at 392.825 kb on - strand, within UW163_RS24945 at 392.833 kb on + strand, within UW163_RS24945 at 392.833 kb on + strand, within UW163_RS24945 at 392.833 kb on + strand, within UW163_RS24945 at 392.835 kb on + strand, within UW163_RS24945 at 392.836 kb on - strand, within UW163_RS24945 at 392.836 kb on - strand, within UW163_RS24945 at 392.836 kb on - strand, within UW163_RS24945 at 392.836 kb on - strand, within UW163_RS24945 at 392.892 kb on + strand at 392.892 kb on + strand at 392.974 kb on + strand at 392.978 kb on + strand at 393.011 kb on - strand at 393.046 kb on - strand at 393.072 kb on + strand at 393.072 kb on + strand at 393.073 kb on - strand at 393.073 kb on - strand at 393.112 kb on - strand at 393.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 392,750 - UW163_RS24945 0.52 -0.2 392,750 - UW163_RS24945 0.52 +0.3 392,756 + UW163_RS24945 0.53 -0.0 392,756 + UW163_RS24945 0.53 -0.5 392,757 - UW163_RS24945 0.54 -0.1 392,757 - UW163_RS24945 0.54 -0.4 392,757 - UW163_RS24945 0.54 -1.2 392,760 + UW163_RS24945 0.55 -0.3 392,760 + UW163_RS24945 0.55 -0.6 392,760 + UW163_RS24945 0.55 -0.4 392,761 - UW163_RS24945 0.55 -0.2 392,761 - UW163_RS24945 0.55 -0.9 392,783 + UW163_RS24945 0.62 -0.1 392,783 + UW163_RS24945 0.62 +0.7 392,784 - UW163_RS24945 0.62 +0.5 392,784 - UW163_RS24945 0.62 +1.1 392,787 + UW163_RS24945 0.63 +1.1 392,788 - UW163_RS24945 0.63 +1.0 392,788 - UW163_RS24945 0.63 -1.5 392,788 - UW163_RS24945 0.63 -0.5 392,788 - UW163_RS24945 0.63 +0.8 392,789 + UW163_RS24945 0.63 -0.7 392,789 + UW163_RS24945 0.63 -0.4 392,790 - UW163_RS24945 0.64 -0.2 392,790 - UW163_RS24945 0.64 +0.7 392,790 - UW163_RS24945 0.64 -0.9 392,794 - UW163_RS24945 0.65 -0.5 392,824 + UW163_RS24945 0.74 -0.3 392,824 + UW163_RS24945 0.74 -0.5 392,825 - UW163_RS24945 0.74 -0.0 392,825 - UW163_RS24945 0.74 -0.2 392,833 + UW163_RS24945 0.77 +0.1 392,833 + UW163_RS24945 0.77 +0.3 392,833 + UW163_RS24945 0.77 -0.6 392,835 + UW163_RS24945 0.77 +0.0 392,836 - UW163_RS24945 0.78 -0.3 392,836 - UW163_RS24945 0.78 +0.0 392,836 - UW163_RS24945 0.78 -0.2 392,836 - UW163_RS24945 0.78 -0.1 392,892 + +0.5 392,892 + +0.6 392,974 + +0.6 392,978 + -0.1 393,011 - +0.1 393,046 - -0.2 393,072 + -0.9 393,072 + -0.2 393,073 - +0.2 393,073 - -0.6 393,112 - +0.5 393,112 - +0.2
Or see this region's nucleotide sequence