Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt UW163_RS16825 and UW163_RS16830 overlap by 4 nucleotides UW163_RS16830 and UW163_RS16835 are separated by 89 nucleotides
UW163_RS16825: UW163_RS16825 - methionine--tRNA ligase, at 134,397 to 135,887
_RS16825
UW163_RS16830: UW163_RS16830 - cupin domain-containing protein, at 135,884 to 136,228
_RS16830
UW163_RS16835: UW163_RS16835 - PTS lactose transporter subunit IIC, at 136,318 to 138,507
_RS16835
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1 at 135.161 kb on + strand, within UW163_RS16825 at 135.165 kb on + strand, within UW163_RS16825 at 135.166 kb on - strand, within UW163_RS16825 at 135.166 kb on - strand, within UW163_RS16825 at 135.290 kb on + strand, within UW163_RS16825 at 135.291 kb on - strand, within UW163_RS16825 at 135.291 kb on - strand, within UW163_RS16825 at 135.291 kb on - strand, within UW163_RS16825 at 135.307 kb on + strand, within UW163_RS16825 at 135.342 kb on + strand, within UW163_RS16825 at 135.378 kb on + strand, within UW163_RS16825 at 135.379 kb on - strand, within UW163_RS16825 at 135.379 kb on - strand, within UW163_RS16825 at 135.379 kb on - strand, within UW163_RS16825 at 135.477 kb on + strand, within UW163_RS16825 at 135.478 kb on - strand, within UW163_RS16825 at 135.672 kb on + strand, within UW163_RS16825 at 135.759 kb on + strand at 135.759 kb on + strand at 135.760 kb on - strand at 135.760 kb on - strand at 135.852 kb on + strand at 135.853 kb on - strand at 135.853 kb on - strand at 136.159 kb on + strand, within UW163_RS16830 at 136.159 kb on + strand, within UW163_RS16830 at 136.159 kb on + strand, within UW163_RS16830 at 136.160 kb on - strand, within UW163_RS16830 at 136.160 kb on - strand, within UW163_RS16830 at 136.160 kb on - strand, within UW163_RS16830 at 136.160 kb on - strand, within UW163_RS16830 at 136.160 kb on - strand, within UW163_RS16830 at 136.308 kb on - strand at 136.320 kb on - strand at 136.421 kb on + strand at 136.421 kb on + strand at 136.422 kb on - strand at 136.530 kb on + strand at 136.530 kb on + strand at 136.531 kb on - strand at 136.599 kb on + strand, within UW163_RS16835 at 136.622 kb on + strand, within UW163_RS16835 at 136.623 kb on - strand, within UW163_RS16835 at 136.623 kb on - strand, within UW163_RS16835 at 136.623 kb on - strand, within UW163_RS16835 at 136.635 kb on + strand, within UW163_RS16835 at 136.635 kb on + strand, within UW163_RS16835 at 136.635 kb on + strand, within UW163_RS16835 at 136.635 kb on + strand, within UW163_RS16835 at 136.635 kb on + strand, within UW163_RS16835 at 136.635 kb on + strand, within UW163_RS16835 at 136.635 kb on + strand, within UW163_RS16835 at 136.636 kb on - strand, within UW163_RS16835 at 136.636 kb on - strand, within UW163_RS16835 at 136.872 kb on + strand, within UW163_RS16835 at 137.029 kb on + strand, within UW163_RS16835 at 137.029 kb on + strand, within UW163_RS16835 at 137.030 kb on - strand, within UW163_RS16835 at 137.030 kb on - strand, within UW163_RS16835 at 137.100 kb on - strand, within UW163_RS16835
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 135,161 + UW163_RS16825 0.51 -0.4 135,165 + UW163_RS16825 0.52 +0.2 135,166 - UW163_RS16825 0.52 +0.7 135,166 - UW163_RS16825 0.52 -0.3 135,290 + UW163_RS16825 0.60 +0.9 135,291 - UW163_RS16825 0.60 -0.0 135,291 - UW163_RS16825 0.60 -0.2 135,291 - UW163_RS16825 0.60 +1.2 135,307 + UW163_RS16825 0.61 +0.1 135,342 + UW163_RS16825 0.63 -1.4 135,378 + UW163_RS16825 0.66 -0.3 135,379 - UW163_RS16825 0.66 -0.1 135,379 - UW163_RS16825 0.66 +0.1 135,379 - UW163_RS16825 0.66 +0.7 135,477 + UW163_RS16825 0.72 +0.0 135,478 - UW163_RS16825 0.73 -0.5 135,672 + UW163_RS16825 0.86 -0.1 135,759 + -2.0 135,759 + -0.3 135,760 - -0.7 135,760 - +0.1 135,852 + -0.4 135,853 - +0.3 135,853 - +0.1 136,159 + UW163_RS16830 0.80 +0.9 136,159 + UW163_RS16830 0.80 -0.0 136,159 + UW163_RS16830 0.80 +0.0 136,160 - UW163_RS16830 0.80 -1.2 136,160 - UW163_RS16830 0.80 -1.9 136,160 - UW163_RS16830 0.80 -0.2 136,160 - UW163_RS16830 0.80 -0.4 136,160 - UW163_RS16830 0.80 -0.1 136,308 - -0.4 136,320 - -0.1 136,421 + -1.5 136,421 + +1.4 136,422 - -0.3 136,530 + +0.2 136,530 + -0.6 136,531 - +0.6 136,599 + UW163_RS16835 0.13 +0.2 136,622 + UW163_RS16835 0.14 -0.2 136,623 - UW163_RS16835 0.14 -0.2 136,623 - UW163_RS16835 0.14 -0.1 136,623 - UW163_RS16835 0.14 -1.6 136,635 + UW163_RS16835 0.14 -0.1 136,635 + UW163_RS16835 0.14 -0.4 136,635 + UW163_RS16835 0.14 +0.5 136,635 + UW163_RS16835 0.14 -0.4 136,635 + UW163_RS16835 0.14 -1.8 136,635 + UW163_RS16835 0.14 +0.1 136,635 + UW163_RS16835 0.14 +0.8 136,636 - UW163_RS16835 0.15 -0.7 136,636 - UW163_RS16835 0.15 -0.6 136,872 + UW163_RS16835 0.25 -0.7 137,029 + UW163_RS16835 0.32 -0.2 137,029 + UW163_RS16835 0.32 +0.2 137,030 - UW163_RS16835 0.33 +0.3 137,030 - UW163_RS16835 0.33 -0.4 137,100 - UW163_RS16835 0.36 -0.0
Or see this region's nucleotide sequence