Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS13330

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntUW163_RS13325 and UW163_RS13330 are separated by 3 nucleotidesUW163_RS13330 and UW163_RS13335 are separated by 73 nucleotides UW163_RS13325: UW163_RS13325 - threonine synthase, at 2,859,407 to 2,860,927 _RS13325 UW163_RS13330: UW163_RS13330 - IclR family transcriptional regulator, at 2,860,931 to 2,861,551 _RS13330 UW163_RS13335: UW163_RS13335 - molybdopterin molybdenumtransferase MoeA, at 2,861,625 to 2,862,884 _RS13335 Position (kb) 2860 2861 2862Strain fitness (log2 ratio) -1 0 1at 2860.926 kb on - strandat 2861.181 kb on - strand, within UW163_RS13330at 2861.181 kb on - strand, within UW163_RS13330at 2861.355 kb on - strand, within UW163_RS13330at 2861.588 kb on - strandat 2861.823 kb on + strand, within UW163_RS13335at 2862.254 kb on + strand, within UW163_RS13335at 2862.332 kb on + strand, within UW163_RS13335at 2862.531 kb on - strand, within UW163_RS13335

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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2,860,926 - -0.1
2,861,181 - UW163_RS13330 0.40 -0.0
2,861,181 - UW163_RS13330 0.40 -1.5
2,861,355 - UW163_RS13330 0.68 -0.8
2,861,588 - -0.9
2,861,823 + UW163_RS13335 0.16 -0.1
2,862,254 + UW163_RS13335 0.50 -0.7
2,862,332 + UW163_RS13335 0.56 -0.4
2,862,531 - UW163_RS13335 0.72 +0.6

Or see this region's nucleotide sequence