Strain Fitness in Ralstonia solanacearum UW163 around UW163_RS11880

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntUW163_RS11870 and UW163_RS11875 are separated by 115 nucleotidesUW163_RS11875 and UW163_RS11880 are separated by 200 nucleotidesUW163_RS11880 and UW163_RS11885 are separated by 37 nucleotides UW163_RS11870: UW163_RS11870 - metal-binding protein, at 2,554,925 to 2,555,464 _RS11870 UW163_RS11875: UW163_RS11875 - 50S ribosomal protein L32, at 2,555,580 to 2,555,759 _RS11875 UW163_RS11880: UW163_RS11880 - phosphate acyltransferase PlsX, at 2,555,960 to 2,557,024 _RS11880 UW163_RS11885: UW163_RS11885 - ketoacyl-ACP synthase III, at 2,557,062 to 2,558,042 _RS11885 Position (kb) 2555 2556 2557 2558Strain fitness (log2 ratio) -1 0 1at 2555.081 kb on - strand, within UW163_RS11870at 2555.081 kb on - strand, within UW163_RS11870at 2555.462 kb on + strandat 2555.498 kb on + strandat 2555.905 kb on + strandat 2555.905 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
2,555,081 - UW163_RS11870 0.29 -0.8
2,555,081 - UW163_RS11870 0.29 -0.0
2,555,462 + +0.5
2,555,498 + +0.1
2,555,905 + -0.7
2,555,905 + +0.3

Or see this region's nucleotide sequence